RetrogeneDB ID:

retro_ttru_1300

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_109962:113971..114222(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS26
Ensembl ID:ENSTTRG00000015012
Aliases:None
Description:ribosomal protein S26 [Source:HGNC Symbol;Acc:10414]


Retrocopy-Parental alignment summary:






>retro_ttru_1300
AAAGATAAGGTCATTAAGGAGTTGGTCATTTGGAACATCGTAGAGGCTGCAGCCATCAGGGACATTTCCAAAGTGAATGT
TTTGAACACCTATGTGCTTCCCAAGCTGTATGTGAAACTACATTACTGCATAAGTTGTGCCATTTACAGCAAGTTGTTCA
GGAATTGTTCTCCTGAAGCTGAAAGGACTGAATACCTCCACCCCAATTTACACCTGTGAGTGCTGCCCCAAGACCTCCAC
CAAAGCCCATG

ORF - retro_ttru_1300 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.59 %
Parental protein coverage: 73.04 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREAR-KDRTPPPR
KDK.IK..VI.NIVEAAA.RDIS...V...YVLPKLYVKLHYC.SCAI.SK..RN.S.EA..KD..PPP.
RetrocopyKDKVIKELVIWNIVEAAAIRDISKVNVLNTYVLPKLYVKLHYCISCAIYSKLFRNCSPEAE<KD*IPPPQ
ParentalFRPAGAAPRPPPKPM
F.P..AAPRPPPKPM
RetrocopyFTPVSAAPRPPPKPM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1300 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1300 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 136 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000032607 retrocopies
Bos taurus ENSBTAG000000388963 retrocopies
Choloepus hoffmanni ENSCHOG0000000148910 retrocopies
Cavia porcellus ENSCPOG000000236306 retrocopies
Dipodomys ordii ENSDORG000000011512 retrocopies
Echinops telfairi ENSETEG0000000451035 retrocopies
Gorilla gorilla ENSGGOG000000115666 retrocopies
Loxodonta africana ENSLAFG000000133298 retrocopies
Myotis lucifugus ENSMLUG0000002996810 retrocopies
Mus musculus ENSMUSG000000253621 retrocopy
Pongo abelii ENSPPYG0000000464216 retrocopies
Pan troglodytes ENSPTRG000000050751 retrocopy
Rattus norvegicus ENSRNOG000000055171 retrocopy
Sus scrofa ENSSSCG000000003742 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000001055912 retrocopies
Tursiops truncatus ENSTTRG00000015012 16 retrocopies



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