Parental gene:

RPL23A, ENSAMEG00000004684

Aliases:None
Description:None
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192339.1:1976733..1980790(-)


>ENSAMEG00000004684
ATGGCGCCGAAGCCTAAGAAGGAAGCCCCTGCCCCTCCCAAAGCCGAAGCCAAAGCAAAGGCTTTGAAGGCCAAGAAAGC
GGTGCTGAAAGGCGTCCACAGCCACAAAAAAAAGAAGATTCGCACGTCACCTACATTCCGACGACCCAAGACTCTGCGTC
TCCGAAGGCAGCCCAAATATCCTCGAAAGAGCGCCCCCAGGAGAAACAAGCTTGATCACTATGCCATCATCAAATTCCCC
CTGACTACTGAGTCAGCCATGAAGAAAATAGAAGACAACAACACACTTGTGTTCATTGTGGATGTCAAGGCCAACAAGCA
CCAGATCAAACAGGCTGTGAAGAAGCTCTATGATATTGATGTGGCCAAGGTCAACACCTTGATCAGGCCTGATGGAGAAA
AGAAGGCGTATGTTCGACTGGCTCCCGACTATGATGCTTTGGATGTTGCCAACAAAATTGGGATCATCTAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005311 possible_ortholog 2 retrogenes
retro_acar_152, retro_acar_173,
Dasypus novemcinctus ENSDNOG00000019487 possible_ortholog 65 retrogenes
retro_dnov_1018, retro_dnov_1065, retro_dnov_1069, retro_dnov_1082, retro_dnov_1169, retro_dnov_120, retro_dnov_123, retro_dnov_1238, retro_dnov_127, retro_dnov_1283, retro_dnov_1365, retro_dnov_1460, retro_dnov_1514, retro_dnov_1538, retro_dnov_1541, retro_dnov_1597, retro_dnov_171, retro_dnov_1781, retro_dnov_1793, retro_dnov_1816, retro_dnov_183, retro_dnov_1835, retro_dnov_1837, retro_dnov_1873, retro_dnov_1926, retro_dnov_203, retro_dnov_2046, retro_dnov_2051, retro_dnov_2089, retro_dnov_2178, retro_dnov_2256, retro_dnov_2278, retro_dnov_2284, retro_dnov_2343, retro_dnov_2368, retro_dnov_246, retro_dnov_2493, retro_dnov_2563, retro_dnov_2573, retro_dnov_267, retro_dnov_372, retro_dnov_401, retro_dnov_429, retro_dnov_470, retro_dnov_499, retro_dnov_556, retro_dnov_581, retro_dnov_591, retro_dnov_611, retro_dnov_625, retro_dnov_636, retro_dnov_64, retro_dnov_67, retro_dnov_683, retro_dnov_704, retro_dnov_718, retro_dnov_731, retro_dnov_736, retro_dnov_749, retro_dnov_769, retro_dnov_813, retro_dnov_832, retro_dnov_903, retro_dnov_929, retro_dnov_972,
Gorilla gorilla ENSGGOG00000016736 possible_ortholog 26 retrogenes
retro_ggor_1027, retro_ggor_1028, retro_ggor_1123, retro_ggor_120, retro_ggor_123, retro_ggor_1284, retro_ggor_140, retro_ggor_1431, retro_ggor_158, retro_ggor_1650, retro_ggor_1743, retro_ggor_1789, retro_ggor_1911, retro_ggor_1948, retro_ggor_2164, retro_ggor_2239, retro_ggor_2285, retro_ggor_229, retro_ggor_2409, retro_ggor_2475, retro_ggor_2568, retro_ggor_2764, retro_ggor_2773, retro_ggor_580, retro_ggor_611, retro_ggor_642,
Loxodonta africana ENSLAFG00000013387 possible_ortholog 16 retrogenes
retro_lafr_1176, retro_lafr_153, retro_lafr_237, retro_lafr_33, retro_lafr_335, retro_lafr_442, retro_lafr_510, retro_lafr_525, retro_lafr_551, retro_lafr_557, retro_lafr_643, retro_lafr_78, retro_lafr_891, retro_lafr_908, retro_lafr_957, retro_lafr_96,
Monodelphis domestica ENSMODG00000019297 possible_ortholog 3 retrogenes
retro_mdom_120, retro_mdom_870, retro_mdom_912,
Nomascus leucogenys ENSNLEG00000002872 possible_ortholog 60 retrogenes
retro_nleu_1004, retro_nleu_1216, retro_nleu_1273, retro_nleu_1290, retro_nleu_1398, retro_nleu_1448, retro_nleu_145, retro_nleu_1544, retro_nleu_158, retro_nleu_160, retro_nleu_161, retro_nleu_1775, retro_nleu_1782, retro_nleu_2004, retro_nleu_2010, retro_nleu_203, retro_nleu_211, retro_nleu_2115, retro_nleu_213, retro_nleu_2312, retro_nleu_2339, retro_nleu_2406, retro_nleu_2413, retro_nleu_2455, retro_nleu_2468, retro_nleu_2474, retro_nleu_2492, retro_nleu_2514, retro_nleu_2594, retro_nleu_2661, retro_nleu_2664, retro_nleu_2784, retro_nleu_2788, retro_nleu_2925, retro_nleu_2943, retro_nleu_2960, retro_nleu_2964, retro_nleu_3026, retro_nleu_3031, retro_nleu_3037, retro_nleu_3056, retro_nleu_3096, retro_nleu_3101, retro_nleu_3107, retro_nleu_3108, retro_nleu_3110, retro_nleu_3114, retro_nleu_3118, retro_nleu_3123, retro_nleu_3124, retro_nleu_328, retro_nleu_355, retro_nleu_356, retro_nleu_401, retro_nleu_473, retro_nleu_518, retro_nleu_641, retro_nleu_902, retro_nleu_938, retro_nleu_966,
Procavia capensis ENSPCAG00000017002 possible_ortholog 30 retrogenes
retro_pcap_103, retro_pcap_122, retro_pcap_131, retro_pcap_187, retro_pcap_213, retro_pcap_215, retro_pcap_221, retro_pcap_233, retro_pcap_246, retro_pcap_279, retro_pcap_320, retro_pcap_321, retro_pcap_331, retro_pcap_336, retro_pcap_342, retro_pcap_347, retro_pcap_368, retro_pcap_372, retro_pcap_382, retro_pcap_390, retro_pcap_392, retro_pcap_396, retro_pcap_437, retro_pcap_450, retro_pcap_453, retro_pcap_460, retro_pcap_61, retro_pcap_70, retro_pcap_82, retro_pcap_96,
Pteropus vampyrus ENSPVAG00000002922 possible_ortholog 32 retrogenes
retro_pvam_1002, retro_pvam_1004, retro_pvam_1083, retro_pvam_1113, retro_pvam_113, retro_pvam_1211, retro_pvam_1226, retro_pvam_1268, retro_pvam_1300, retro_pvam_1329, retro_pvam_1350, retro_pvam_1363, retro_pvam_1456, retro_pvam_159, retro_pvam_249, retro_pvam_385, retro_pvam_425, retro_pvam_436, retro_pvam_445, retro_pvam_511, retro_pvam_526, retro_pvam_537, retro_pvam_564, retro_pvam_593, retro_pvam_72, retro_pvam_729, retro_pvam_752, retro_pvam_840, retro_pvam_897, retro_pvam_927, retro_pvam_947, retro_pvam_95,
Sarcophilus harrisii ENSSHAG00000014549 possible_ortholog 13 retrogenes
retro_shar_188, retro_shar_373, retro_shar_407, retro_shar_448, retro_shar_498, retro_shar_564, retro_shar_624, retro_shar_630, retro_shar_685, retro_shar_698, retro_shar_824, retro_shar_829, retro_shar_835,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_75 77.66 60.26
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2. retro_amel_121 83.12 98.72
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3. retro_amel_288 87.97 99.36
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4. retro_amel_304 68.28 90.38
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5. retro_amel_323 78.48 100.00
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6. retro_amel_467 63.00 63.46
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7. retro_amel_479 75.16 100.00
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8. retro_amel_514 80.00 76.92
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9. retro_amel_667 73.25 100.00
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10. retro_amel_773 77.22 100.00
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11. retro_amel_843 83.90 75.00
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12. retro_amel_894 74.68 100.00
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13. retro_amel_901 75.16 100.00
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14. retro_amel_956 76.27 75.00
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15. retro_amel_1044 92.99 100.00
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16. retro_amel_1154 86.52 89.74
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17. retro_amel_1254 62.09 96.15
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18. retro_amel_1302 79.31 89.74
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19. retro_amel_1383 66.88 98.08
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20. retro_amel_1391 80.13 96.79
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21. retro_amel_1423 64.29 76.92
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22. retro_amel_1503 67.08 100.00
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23. retro_amel_1505 68.03 93.59
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24. retro_amel_1511 74.38 100.00
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25. retro_amel_1527 85.53 96.79
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26. retro_amel_1532 72.15 100.00
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27. retro_amel_1568 61.38 89.74
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28. retro_amel_1576 74.52 100.00
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29. retro_amel_1585 71.01 85.26
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30. retro_amel_1702 89.24 100.00
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31. retro_amel_1822 68.75 100.00
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Download FASTA sequences of all ENSAMEG00000004684 retrocopies