RetrogeneDB ID: | retro_amel_1568 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193631.1:265297..265713(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSAMEG00000004684 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.38 % |
Parental protein coverage: | 89.74 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MAPKPKKEAPAPPKAEAKAKALKAKK-AVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAP-RR |
M..K.KKE..A.P....K....K..K..V..........KI.TSPTF..PKTL.LRRQPKY..KSA.... | |
Retrocopy | MVSKAKKETLA-PSPKPKQRL*KPRK>GVERCPQPRTERKIHTSPTF*WPKTLQLRRQPKYLWKSAL>EK |
Parental | NKLDHYAIIKFP-LTTESAMKK-IEDNNTL-VFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKK |
..LDH.AI.KFP.LTTESAMK..IE.NNTL.VF.VDVKANKHQIKQAV.K..D.DVAKV.TL.RPDG.KK | |
Retrocopy | QALDH*AIMKFP<LTTESAMKT<IEENNTL<VFTVDVKANKHQIKQAVRKFCDTDVAKVSTLMRPDGQKK |
Parental | AYVRL |
AYV.L | |
Retrocopy | AYVWL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |