RetrogeneDB ID: | retro_amel_1302 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193173.1:235889..236307(+) | ||
Located in intron of: | ENSAMEG00000000830 | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000000844 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSAMEG00000004684 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.31 % |
Parental protein coverage: | 89.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MAPKPKKEAPAP-PKAEA-KAKALKAKKAVLKGVHSHKKKKIRTSPTF-RRPKTLRLRRQPKYP-RKSAP |
MAPK..KEAPAP.PK....KAK.LKAK..VLKGVHSH....IRTSPTF..R.KTL.LRRQPKYP.RKS.P | |
Retrocopy | MAPKARKEAPAP>PKLKPNKAKPLKAKNTVLKGVHSHXXX-IRTSPTF<LRTKTLCLRRQPKYP<RKSTP |
Parental | -RRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKK |
.RRNK.DHYAIIK.PLTTESAMKKIEDNNTLVF.V.V.ANKHQIKQA.KK.YDIDVAKVNTLIRPDG.KK | |
Retrocopy | <RRNKIDHYAIIKIPLTTESAMKKIEDNNTLVFFVNVEANKHQIKQAAKKPYDIDVAKVNTLIRPDGQKK |
Parental | AYVRL |
AYV.L | |
Retrocopy | AYVWL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |