RetrogeneDB ID: | retro_amel_304 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192379.1:2464448..2464863(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSAMEG00000004684 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.28 % |
Parental protein coverage: | 90.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MAPKPKKEAPAPPK-AEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFR-RPKTLRLRRQPKYPRKSAPRR |
..PK.K.EAP.PPK..........AK..V.KGVHSH.KK.I.TS.TF...P.TL.L.RQPKYP.KS.PRR | |
Retrocopy | IVPKGKEEAPVPPK<SQSQSQS-QAKTGVWKGVHSHRKK-ICTSLTFD<QPRTLFL*RQPKYPQKSTPRR |
Parental | NKLDHYAII-KFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVA-KVNTLIRPDGEKKA |
.KLDHYAII..FPLTTES.MKKIEDN.TLVFIV.VKANKHQI..AV.KLYDIDVA.K.NT.I.PDGEK.A | |
Retrocopy | SKLDHYAII<QFPLTTESVMKKIEDNSTLVFIVNVKANKHQIR*AVTKLYDIDVA>KGNTPITPDGEKAA |
Parental | YVRLA |
YVR.. | |
Retrocopy | YVRFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |