RetrogeneDB ID: | retro_amel_323 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192386.1:1844927..1845395(+) | ||
Located in intron of: | ENSAMEG00000000933 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSAMEG00000004684 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.48 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAPKPKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKK-KIRTSPTFRRPKTLRLRRQPKYPRKSAPRRN |
M..K.KKEA.APPKAEAKAKALKAKK..LKGVHS.....KI.TSPTF..PKT..LRRQPKYP.KS.P.RN | |
Retrocopy | MELKAKKEASAPPKAEAKAKALKAKKVMLKGVHSRXXX>KICTSPTFQ*PKTMCLRRQPKYPSKSTPKRN |
Parental | KLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVR |
KLD.Y.IIKFPLTTESAMKK.EDNNTL.FIVDVK.NKHQ.KQAV.KL.DIDVAKVNTL.RPDGEKKAYV. | |
Retrocopy | KLDLYVIIKFPLTTESAMKKREDNNTLMFIVDVKTNKHQVKQAVRKL*DIDVAKVNTLMRPDGEKKAYVQ |
Parental | LAPDYDA-LDVANKIGII |
.A.DYD..LDV.NKIGII | |
Retrocopy | QASDYDT<LDVTNKIGII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |