RetrogeneDB ID: | retro_amel_1576 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193642.1:400735..401206(+) | ||
Located in intron of: | ENSAMEG00000016230 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSAMEG00000004684 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAPKPKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKK-IRTSPTFRRPKTLRLRRQPKYPRKSAPRRN |
M..K.KKEA..P.K.EAKAK.LK..K.VLKGVHSH.....I.TSP..R.PKTL...RQPKY..KS.PRRN | |
Retrocopy | MVLKAKKEAADPLKPEAKAKTLKTNKVVLKGVHSHXXXX*ICTSPALRWPKTLHPQRQPKYS*KSTPRRN |
Parental | KLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVR |
KL.HYA.IKFPLTT.S.MKKIEDNNTLVFIVD...NKHQIKQ.VKKL.DIDVAKVNTLIRP.G.KKAYV. | |
Retrocopy | KLNHYATIKFPLTTDSSMKKIEDNNTLVFIVDARDNKHQIKQTVKKLCDIDVAKVNTLIRPNGVKKAYVQ |
Parental | LAPDYDALDVANKIGII |
L.PDYDALDVANK.GII | |
Retrocopy | LVPDYDALDVANKVGII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |