RetrogeneDB ID:

retro_amel_75

Retrocopy
location
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL194007.1:387618..387933(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSAMEG00000018533
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL23A
Ensembl ID:ENSAMEG00000004684
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_amel_75
AGGCAGCCGAAATATCCTCAAAAGAGTGCCCCCAGGAGAAACAAGTTTGACCCCTATGCCATCATCAAGCCCCCGACCAC
CGAGTCAGCCATGAAGAAGACAGCAGACAACAACACACTTCTATTCATTGTGGATGTCAAAATCAACAAGCGCCAGATCG
AACAGCCTATGAAGAAGCTCTCTGACATTGATGTGGTCAAGGTCAACACCCTGATCAAGCCTGATAAAGAGAATAAAGCA
TATGTTCAACTAGCTCCTGACTATGGTGCTTGGGATGTTGACCCAACAAAAGTGGGATCATCTAAACCGAGTCCA

ORF - retro_amel_75 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.66 %
Parental protein coverage: 60.26 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVN
RQPKYP.KSAPRRNK.D.YAIIK.P.TTESAMKK..DNNTL.FIVDVK.NK.QI.Q..KKL.DIDV.KVN
RetrocopyRQPKYPQKSAPRRNKFDPYAIIK-PPTTESAMKKTADNNTLLFIVDVKINKRQIEQPMKKLSDIDVVKVN
ParentalTLIRPDGEKKAYVRLAPDYDALDV
TLI.PD.E.KAYV.LAPDY.A.DV
RetrocopyTLIKPDKENKAYVQLAPDYGAWDV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_75 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_75 was not experimentally validated.

Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 278 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000053112 retrocopies
Ailuropoda melanoleuca ENSAMEG00000004684 31 retrocopies
Dasypus novemcinctus ENSDNOG0000001948765 retrocopies
Gorilla gorilla ENSGGOG0000001673626 retrocopies
Loxodonta africana ENSLAFG0000001338716 retrocopies
Monodelphis domestica ENSMODG000000192973 retrocopies
Nomascus leucogenys ENSNLEG0000000287260 retrocopies
Procavia capensis ENSPCAG0000001700230 retrocopies
Pteropus vampyrus ENSPVAG0000000292232 retrocopies
Sarcophilus harrisii ENSSHAG0000001454913 retrocopies



Copyright © RetrogeneDB 2014-2017