RetrogeneDB ID: | retro_amel_1154 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192968.1:843738..844159(-) | ||
Located in intron of: | ENSAMEG00000008433 | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000008441 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSAMEG00000004684 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.52 % |
Parental protein coverage: | 89.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAPKPKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKK-KIRTSPTFRRPKTLRLRRQPKYPRKSAPRRN |
MAPK..KEAPAPPKAEAKAKALKAKK..LKG.HSH....KI.TSPTF..PKTLRL..QPKYPRKS.PRRN | |
Retrocopy | MAPKARKEAPAPPKAEAKAKALKAKKVGLKGIHSHXXX>KIGTSPTF**PKTLRLQKQPKYPRKSNPRRN |
Parental | KLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVR |
KLDHYAIIKFPLTTESAMKKIEDNNTLVF.VDVKANK..IKQAVKKLYDIDVAKVNTLIRPDGEKKAY.R | |
Retrocopy | KLDHYAIIKFPLTTESAMKKIEDNNTLVFTVDVKANKNLIKQAVKKLYDIDVAKVNTLIRPDGEKKAYIR |
Parental | L |
L | |
Retrocopy | L |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |