RetrogeneDB ID: | retro_amel_288 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192375.1:3715432..3715897(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000008720 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSAMEG00000004684 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.97 % |
Parental protein coverage: | 99.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAPKPKKEAPAPPKAEAKAKALKAKKAVLKGVHSH-KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPR-R |
MAPKPKKEAPAPPKAEAKAKALKAKKAVLKGVHSH..........TFR.PKTLRLRRQ.KYP.K..P..R | |
Retrocopy | MAPKPKKEAPAPPKAEAKAKALKAKKAVLKGVHSHXXXXRFARHLTFRGPKTLRLRRQCKYP-KEHPQ>R |
Parental | NKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNT-LIRPDGEKKAY |
NKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNT.LIRPDGEKKAY | |
Retrocopy | NKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNT<LIRPDGEKKAY |
Parental | VRLAPDYDALDVANKIGI |
VRLAPD.DALDVANKIGI | |
Retrocopy | VRLAPDCDALDVANKIGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |