RetrogeneDB ID: | retro_amel_1532 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193563.1:262274..262744(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000004176 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSAMEG00000004684 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAPKPKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNK |
MA.K.KKEA.A.PKAEAKA.ALKA.KAVLK..HS.KK.K..TSPT...P..L.L.RQPKYP.K.APRR.K | |
Retrocopy | MARKVKKEALASPKAEAKARALKATKAVLKAIHSQKKLKFCTSPTVPQPHALHLQRQPKYP*KCAPRRKK |
Parental | -LDHYAIIKFP-LTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYV |
.LDH.AIIK.P.LTT.SA.KKIEDN.TLVFIVD.KA.KHQIKQAVKKLYD.DVAKVN...R...EKK.Y. | |
Retrocopy | >LDHCAIIKWP>LTTKSATKKIEDNSTLVFIVDIKADKHQIKQAVKKLYDPDVAKVNIPTRTEQEKKTYI |
Parental | RLAPDYDALDVANKIGII |
.LA.DYDALDVANKI.I. | |
Retrocopy | QLAADYDALDVANKIAIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |