RetrogeneDB ID: | retro_amel_1511 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193528.1:430751..431208(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSAMEG00000004684 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MAPKPKKEAPAPPKAEAKAKALKAKKAVLKGVHSH-KKKKIRTSPT-FRRPKTLRLRRQPKYPRKSAPRR |
MA.K.KKE..A.P.A.AKAKALKAKK..LKGVHSH..KK.IR.SPT.F..PKTL.L.RQPKYP.KSAPRR | |
Retrocopy | MASKVKKEVSALPTAGAKAKALKAKKVELKGVHSH>YKKEIRMSPT<F*WPKTLHL*RQPKYPQKSAPRR |
Parental | NKLDHYAIIKF-PLTTESA-MKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKA |
N..DHYAIIKF.PLTTESA..KK.EDN.TL....DV.A.KHQIKQA..KL.DI.VAKVNTLIRPDG.KKA | |
Retrocopy | NNFDHYAIIKF<PLTTESA<VKKTEDNSTL---ADVEASKHQIKQAMRKLEDIEVAKVNTLIRPDGDKKA |
Parental | YVRLAPDYDALDVANKIGII |
YV..APDYDALDVA.KI.II | |
Retrocopy | YVLRAPDYDALDVAHKIRII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |