RetrogeneDB ID: | retro_btau_1473 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 6:323373..323914(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000032764 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.87494 | ||
Ensembl ID: | ENSBTAG00000011184 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:O46414] |
Percent Identity: | 92.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MTTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAERL |
MTTASPSQVRQNYHQDSEAAIN.QINLELYASYVYL.MSYYFDRDDV.LKNFAKYFLHQSHEEREHAERL | |
Retrocopy | MTTASPSQVRQNYHQDSEAAINLQINLELYASYVYLIMSYYFDRDDVVLKNFAKYFLHQSHEEREHAERL |
Parental | MKLQNQRGGRIFLQDIKKPDRDDWENGLTAMECALCLERSVNQSLLELHKLATE-NDPHLCDFIETHYLN |
MKLQNQRGGRIFLQDIKKPDRDDWENGLTAMEC.LCLERSVNQSLLELHKLATE.N....C....THYLN | |
Retrocopy | MKLQNQRGGRIFLQDIKKPDRDDWENGLTAMECVLCLERSVNQSLLELHKLATE>NMIPICVISLTHYLN |
Parental | EQVEAIKELGDHITNLRKMGAPGSGMAEYLFDKHTLGHSES |
EQVEAIKELGDHITNLRKMGAPGSGMAEYLFDKHTLGHSES | |
Retrocopy | EQVEAIKELGDHITNLRKMGAPGSGMAEYLFDKHTLGHSES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 4 .40 RPM | 1205 .08 RPM |
ERP005899_muscle | 0 .79 RPM | 957 .01 RPM |
SRP017611_brain | 6 .17 RPM | 1335 .71 RPM |
SRP017611_kidney | 3 .44 RPM | 719 .44 RPM |
SRP017611_liver | 5 .66 RPM | 1381 .28 RPM |
SRP030211_testis | 0 .47 RPM | 325 .48 RPM |