RetrogeneDB ID: | retro_btau_1745 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:62543486..62544029(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.87494 | ||
Ensembl ID: | ENSBTAG00000011184 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:O46414] |
Percent Identity: | 95.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MTTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAERL |
MTTASPSQ.RQNYHQDSEA.INRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQS..EREHAERL | |
Retrocopy | MTTASPSQMRQNYHQDSEATINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSN*EREHAERL |
Parental | MKLQNQRGGRIFLQDIKKPDRDDWENGLTAMECALCLERSVNQSLLELHKLATE-NDPHLCDFIETHYLN |
M.LQNQRGGRIFLQDIKK.DRDDWENGLTAMECALCLERSVNQSLLELHKLATE.NDPHLCDFIETHYLN | |
Retrocopy | MRLQNQRGGRIFLQDIKKSDRDDWENGLTAMECALCLERSVNQSLLELHKLATEKNDPHLCDFIETHYLN |
Parental | EQVEAIKELGDHITNLRKMGAPGSGMAEYLFDKHTLGHSES |
EQVEAIKELGDHITNLRKMG.PGSGMAEYLFDKHTLGHSES | |
Retrocopy | EQVEAIKELGDHITNLRKMGGPGSGMAEYLFDKHTLGHSES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 142 .39 RPM | 1205 .08 RPM |
ERP005899_muscle | 185 .45 RPM | 957 .01 RPM |
SRP017611_brain | 113 .28 RPM | 1335 .71 RPM |
SRP017611_kidney | 72 .07 RPM | 719 .44 RPM |
SRP017611_liver | 118 .40 RPM | 1381 .28 RPM |
SRP030211_testis | 46 .82 RPM | 325 .48 RPM |