RetrogeneDB ID: | retro_btau_1151 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 28:16655920..16656452(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000035206 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.87494 | ||
Ensembl ID: | ENSBTAG00000011184 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:O46414] |
Percent Identity: | 80.56 % |
Parental protein coverage: | 98.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MTTASPSQVRQN-YHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAER |
.TTASP.QVR.N..HQ..EA.I..QINLELY.S.V.L..SYYFD.DDVALKNFAKYFLHQSHEEREH.E. | |
Retrocopy | LTTASPLQVR*N<HHQHLEASISCQINLELYTSCVCLPTSYYFDHDDVALKNFAKYFLHQSHEEREHTEK |
Parental | LMKLQNQRGGRIFLQDIKKPDRDDWENGLTAMECALCLERSVNQSLLELHKLATE-NDPHLCDFIETHYL |
.MKLQNQRGGRIFLQDIKKPDR.DWENGL.A.ECALCLERSVNQSLLELHKLATE.NDP.LC.F.ET.YL | |
Retrocopy | PMKLQNQRGGRIFLQDIKKPDRHDWENGLNATECALCLERSVNQSLLELHKLATEKNDPQLCNFTETYYL |
Parental | NEQVEAI-KELGDHITNLRKMGAPGSGMAEYLFDKHTLGH |
NEQVEA..KELG.HI..L.KM.APGSG.AEYLFDKHTLGH | |
Retrocopy | NEQVEAT<KELGNHIITLCKMWAPGSGIAEYLFDKHTLGH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 2 .67 RPM | 1205 .08 RPM |
ERP005899_muscle | 0 .00 RPM | 957 .01 RPM |
SRP017611_brain | 2 .24 RPM | 1335 .71 RPM |
SRP017611_kidney | 0 .36 RPM | 719 .44 RPM |
SRP017611_liver | 1 .06 RPM | 1381 .28 RPM |
SRP030211_testis | 0 .03 RPM | 325 .48 RPM |