RetrogeneDB ID: | retro_btau_1255 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:12252112..12252547(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.87494 | ||
Ensembl ID: | ENSBTAG00000011184 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:O46414] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 80. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | SMSYYFDRDDVALKNFAKYFL-HQSHEEREHAERLMKLQNQRGGRIFLQDIKKPDRDDWENGLTAMECAL |
S.SY.FD.DDVALKNFAKYFL..QS..EREHAE..MKLQNQ..GRIF..D.K..D.DDWENG..AMEC.L | |
Retrocopy | SVSYCFDCDDVALKNFAKYFL<YQSCDEREHAEKRMKLQNQ*SGRIFP*DVKELDLDDWENGWSAMECVL |
Parental | CLERSVNQSLLELHKLATE-NDPHLCDFIETHYLNEQVEAIKELGDHITNLRK-MGAPGSGMAEYLFDKH |
.LE.SVN.S.LELHKLAT..NDPHLCDFI.THYLNEQ....KELGD..TNL.K..G.P.SGMAEYLFDKH | |
Retrocopy | HLEKSVN*SPLELHKLATDRNDPHLCDFIGTHYLNEQEKSNKELGDRVTNLCK>RGSPESGMAEYLFDKH |
Parental | TLGHSES |
.LGH... | |
Retrocopy | ILGHRDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 1205 .08 RPM |
ERP005899_muscle | 0 .00 RPM | 957 .01 RPM |
SRP017611_brain | 0 .27 RPM | 1335 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 719 .44 RPM |
SRP017611_liver | 0 .00 RPM | 1381 .28 RPM |
SRP030211_testis | 0 .09 RPM | 325 .48 RPM |