RetrogeneDB ID: | retro_btau_121 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 7:33312276..33313005(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000005779 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.87494 | ||
Ensembl ID: | ENSBTAG00000011184 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:O46414] |
Percent Identity: | 76.84 % |
Parental protein coverage: | 97.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAERLMKLQ |
.PS.VRQN.H.DSEAAINRQINLELYASYVYLSM.YYF.RDDVAL.NFA.YFL..S.EE.EHAE.LM.LQ | |
Retrocopy | APSRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALHNFARYFLRLSREETEHAEKLMRLQ |
Parental | NQRGGRIFLQDIKKPDRDDWENGLTAMECALCLERSVNQSLLELHKLATE-NDPHLCDFIETHYLNEQVE |
NQRGG.I.LQDIKKPD..DW..GL.AMECAL.LE..VNQSLLELH.LA....DPHLCDF.ETHYLNEQV. | |
Retrocopy | NQRGGLICLQDIKKPDQNDWKSGLNAMECALLLEKNVNQSLLELHTLASDKGDPHLCDFLETHYLNEQVK |
Parental | AIKELGDHITNLRKMGAPGSGMAEYLFDKHTLGHSES |
.IKELGDH..NL.KMGAP.SG.AEYLFDKHTLG.... | |
Retrocopy | SIKELGDHVNNLVKMGAPESGLAEYLFDKHTLGNENN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 1205 .08 RPM |
ERP005899_muscle | 0 .00 RPM | 957 .01 RPM |
SRP017611_brain | 0 .00 RPM | 1335 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 719 .44 RPM |
SRP017611_liver | 0 .00 RPM | 1381 .28 RPM |
SRP030211_testis | 41 .64 RPM | 325 .48 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_87 |
Pongo abelii | retro_pabe_35 |
Mus musculus | retro_mmus_45 |
Sus scrofa | retro_sscr_78 |