Parental gene:

RPL15, ENSEEUG00000011286

Aliases:None
Description:ribosomal protein L15 [Source:HGNC Symbol;Acc:10306]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_241337:567..2646(+)


>ENSEEUG00000011286
GGAAGAGGGCTCTTTCCTTTCTGTGTGGCGGCAGCCATCTACATCCAGGAGCTGTGGAGGAAGAAGCAGTCGGACGTGAT
GCGCTTCCTGCTCCGCGTGCGCTGCTGGCAGTACCGTCAGCTGTCGGCGCTGCACAGGGCGCCGCGCCCCACGCGGCCGG
ACAAAGCCCGCAGGCTGGGCTACAAGGCGAAGCAAGGTTACGTCATATATCGGATTCGTGTCCGCCGCGGTGGCCGCAAA
CGCCCTGTTCCCAAGGGTGCGACCTACGGCAAGCCGGTCCATCATGGCGTCAACCAGCTGAAGTTCGCGCGGAGCCTTCA
GTCTGTTGCTGAGGAGCGAGCTGGACGCCACTGTGGGGCTCTGAGAGTGCTGAATTCTTACTGGGTGGGCGAAGATTCCA
CATACAAGTTTTTTGAGGTCATCCTCATTGATCCATTCCATAAAGCGATCAGAAGAAATCCCGACACCCAGTGGATCACC
AAACCTGTCCACAAGCACAGGGAGATGCGGGGGCTGACATCCGCAGGCCGCAAGAGCCGTGGCCTTGGAAAGGGCCACAA
GTTCCACCACACCATTGGTGGTTCTCGCCGCGCAGCTTGGAGAAGGCGCAATACTCTCCAGCTCCACCGTTACCGC

Library Parental gene expression (RPM)
SRP017611_brain 48 .99 RPM
SRP017611_kidney 131 .28 RPM
SRP017611_liver 73 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000033080 possible_ortholog 2 retrogenes
retro_btau_152, retro_btau_201,
Echinops telfairi ENSETEG00000015044 ortholog_one2one 4 retrogenes
retro_etel_1438, retro_etel_431, retro_etel_658, retro_etel_943,
Macropus eugenii ENSMEUG00000014522 ortholog_one2one 3 retrogenes
retro_meug_1678, retro_meug_2006, retro_meug_2112,
Macaca mulatta ENSMMUG00000006353 ortholog_one2one 1 retrogene
retro_mmul_209,
Mustela putorius furo ENSMPUG00000012148 possible_ortholog 7 retrogenes
retro_mputfur_1011, retro_mputfur_1252, retro_mputfur_1291, retro_mputfur_314, retro_mputfur_346, retro_mputfur_658, retro_mputfur_669,
Mus musculus ENSMUSG00000012405 possible_ortholog 2 retrogenes
retro_mmus_118, retro_mmus_8,
Otolemur garnettii ENSOGAG00000013056 possible_ortholog 13 retrogenes
retro_ogar_1066, retro_ogar_1129, retro_ogar_1182, retro_ogar_1453, retro_ogar_1483, retro_ogar_1629, retro_ogar_1809, retro_ogar_2378, retro_ogar_270, retro_ogar_3058, retro_ogar_3096, retro_ogar_3349, retro_ogar_903,
Procavia capensis ENSPCAG00000011995 possible_ortholog 1 retrogene
retro_pcap_265,
Rattus norvegicus ENSRNOG00000008140 possible_ortholog 17 retrogenes
retro_rnor_1046, retro_rnor_1409, retro_rnor_1497, retro_rnor_1685, retro_rnor_1690, retro_rnor_1785, retro_rnor_2042, retro_rnor_2249, retro_rnor_2313, retro_rnor_2451, retro_rnor_2473, retro_rnor_2786, retro_rnor_2997, retro_rnor_428, retro_rnor_66, retro_rnor_710, retro_rnor_844,
Sus scrofa ENSSSCG00000028079 possible_ortholog 5 retrogenes
retro_sscr_1219, retro_sscr_1225, retro_sscr_448, retro_sscr_968, retro_sscr_997,
Tupaia belangeri ENSTBEG00000009843 ortholog_one2one 34 retrogenes
retro_tbel_1031, retro_tbel_1072, retro_tbel_1322, retro_tbel_1346, retro_tbel_1363, retro_tbel_1524, retro_tbel_1668, retro_tbel_1931, retro_tbel_1980, retro_tbel_2035, retro_tbel_2212, retro_tbel_2270, retro_tbel_2453, retro_tbel_2634, retro_tbel_2818, retro_tbel_3196, retro_tbel_3208, retro_tbel_3387, retro_tbel_3449, retro_tbel_352, retro_tbel_3936, retro_tbel_4079, retro_tbel_4417, retro_tbel_4433, retro_tbel_4477, retro_tbel_4564, retro_tbel_4705, retro_tbel_476, retro_tbel_555, retro_tbel_727, retro_tbel_746, retro_tbel_84, retro_tbel_929, retro_tbel_992,
Tursiops truncatus ENSTTRG00000007244 ortholog_one2one 5 retrogenes
retro_ttru_1305, retro_ttru_1358, retro_ttru_280, retro_ttru_920, retro_ttru_987,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_28 74.23 76.89
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2. retro_eeur_200 66.67 60.38
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3. retro_eeur_400 87.86 65.09
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4. retro_eeur_685 68.52 75.94
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5. retro_eeur_694 73.87 92.92
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Download FASTA sequences of all ENSEEUG00000011286 retrocopies