RetrogeneDB ID: | retro_rnor_1046 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 14:46206419..46206943(-) | ||
Located in intron of: | ENSRNOG00000002190 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl15 | ||
Ensembl ID: | ENSRNOG00000008140 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:P61314] |
Percent Identity: | 80.68 % |
Parental protein coverage: | 85.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QYRQLSALHRAPRPT-RPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARS |
QY.QLS.L.R...PT.RPDKA.RLGYKAKQ.YVIYRIRV.RGG.K.P.PKGATYGKPVHHG.N.LKFA.S | |
Retrocopy | QYHQLSELQRGSSPT<RPDKAGRLGYKAKQVYVIYRIRVQRGGHKHPIPKGATYGKPVHHGANRLKFAGS |
Parental | LQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSA |
LQS.AEERAG.HC..L.VLNSYWVGEDSTYK.FEVILI.P.HKAIRRNPDTQWITKPVHKHRE.RGLTSA | |
Retrocopy | LQSAAEERAGSHCETLKVLNSYWVGEDSTYKYFEVILIKPVHKAIRRNPDTQWITKPVHKHREIRGLTSA |
Parental | GRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRY |
G..SRGLGKGHK.HHTIGGS...AWRRR..L.LHRY | |
Retrocopy | GCRSRGLGKGHKGHHTIGGSHHVAWRRRDIL*LHRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 65 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 79 .83 RPM |
SRP017611_liver | 0 .00 RPM | 65 .62 RPM |