RetrogeneDB ID: | retro_rnor_1785 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:28305140..28305590(+) | ||
Located in intron of: | ENSRNOG00000013232 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl15 | ||
Ensembl ID: | ENSRNOG00000008140 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:P61314] |
Percent Identity: | 75.66 % |
Parental protein coverage: | 73.04 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLG-YKAKQGYVIYRIRVRRG |
.GAYK.I..LW.K.QSD.M.FLLRVRCWQYRQLS.LHRAP.PT.PDK..RLG..KAKQGYVIYR.RV..G | |
Retrocopy | VGAYKHI*KLWVKNQSDLMHFLLRVRCWQYRQLSVLHRAPAPTWPDKG*RLG<IKAKQGYVIYRVRVHHG |
Parental | GRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTY-KFFEVILIDPF |
G.KR.VPKG.T.GKPVHHG..QLKFA.SLQSVAEERAG.HCG..RVLNSYWVGE..TY....EVILID.F | |
Retrocopy | GCKRLVPKGET*GKPVHHGAKQLKFA*SLQSVAEERAGHHCGSVRVLNSYWVGEGCTY>XXXEVILIDLF |
Parental | HKA-IRRNPDTQ |
HKA.IRRNP.TQ | |
Retrocopy | HKAIIRRNPNTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 65 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 79 .83 RPM |
SRP017611_liver | 0 .00 RPM | 65 .62 RPM |