RetrogeneDB ID: | retro_tbel_2453 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_110923:14389..14941(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSTBEG00000009843 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 76.6 % |
Parental protein coverage: | 85.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | VMRFLLRVRCWQYRQLSALHRAPRPTRPDKAR-RLGYKAK-QGYVIYRIRVR-RGGRKRPVPKGATYGKP |
VM.FLLRVRCW.YRQL..LHRA..PT..DKA..RL.YKAK..GYVIY.IR....GG.K.PVPK.ATYGKP | |
Retrocopy | VMHFLLRVRCWLYRQLLGLHRAL*PTLQDKAA<RLDYKAK<EGYVIYWIRAQ<GGGHKCPVPKSATYGKP |
Parental | VHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKP |
.HHGVNQLKFARSL.SVAEERAG..C.A.RVLN.YWVGEDSTYKF.EVILI.PF..AIRRNPDTQWI.KP | |
Retrocopy | IHHGVNQLKFARSLWSVAEERAGCLCEAHRVLNYYWVGEDSTYKFLEVILIHPFDEAIRRNPDTQWIIKP |
Parental | VHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHR |
VHKHREMRGLTS.G..S..LGK.HKF..TIGGSR.AAWRR.N.LQLHR | |
Retrocopy | VHKHREMRGLTSTGHESQCLGKDHKFYYTIGGSRHAAWRRPNILQLHR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |