RetrogeneDB ID: | retro_rnor_2786 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:37308931..37309544(+) | ||
Located in intron of: | ENSRNOG00000032472 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000048098 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl15 | ||
Ensembl ID: | ENSRNOG00000008140 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:P61314] |
Percent Identity: | 80.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALH-RAPRPTRPDKARRLGYKAKQGYVIYRIRVRRG |
MG.YKYIQELWRKKQSD.MRF.LRV.CWQY..LSAL..RAPRPTRP.KARRLGYKAKQ.YVIY.I.V..G | |
Retrocopy | MGTYKYIQELWRKKQSDMMRFPLRVHCWQYH*LSALQ<RAPRPTRPGKARRLGYKAKQVYVIYKIHVCCG |
Parental | GRKRPVPKGA-TYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPF |
G.K.PVPKG..TY.KP.H.GVNQLKFA.SLQS.A.E.AG.HCG.LRVLNSYWVGEDSTYKFFEVILIDPF | |
Retrocopy | GHKHPVPKGT<TYSKPIHQGVNQLKFAQSLQSAAGETAGYHCGVLRVLNSYWVGEDSTYKFFEVILIDPF |
Parental | HKAIRRNPDTQWITKPVHKHRE-MRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
HKAIRRNPDTQW.TK.VHKHR..M.GLTSAG.KS.GLGKGHKFHHTIGGS....WRR.NTLQ.HRYR | |
Retrocopy | HKAIRRNPDTQWSTKVVHKHRDAMYGLTSAGCKSHGLGKGHKFHHTIGGSCHVTWRRHNTLQFHRYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 65 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 79 .83 RPM |
SRP017611_liver | 0 .00 RPM | 65 .62 RPM |