RetrogeneDB ID: | retro_tbel_1322 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4390:222182..222680(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSTBEG00000009843 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 72.35 % |
Parental protein coverage: | 75.12 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | APRPTRPDKARRLGYKAKQG--YVIYRIRVRRGGRKR-PVPKGATYGKPVHHGVNQLKFARSLQSVAEER |
AP..T.P..AR.......QG..YVIYRI.V..GGRK..PVPK.ATYG.PVHHG.NQLKFARS.QSVAEER | |
Retrocopy | APLGTPPHLARQSTQTGVQG*AYVIYRIHVCCGGRKY<PVPKSATYGQPVHHGANQLKFARSFQSVAEER |
Parental | AGRHCGALRVLNSYWVGEDSTYKF-FE-VILIDPFHKAIRRN-PDTQWITKPVH-KHREMRGLTSAGRKS |
AGRH.GALRVLNSYWVGEDS..KF.FE.V.LI.PFHKA.....PDTQWITKPVH..H.EM.GLT.AGRKS | |
Retrocopy | AGRH*GALRVLNSYWVGEDSI*KF>FE>VFLIHPFHKATQKETPDTQWITKPVH<QHKEMHGLTAAGRKS |
Parental | RGLGKGHKFHHTIGGSRRAAWRRRNTLQLH |
.G..K.HK.HHTIGGS.RAAWRR.NTLQLH | |
Retrocopy | HGPVKSHKVHHTIGGSSRAAWRRLNTLQLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |