RetrogeneDB ID:

retro_tbel_992

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_3520:54929..55404(+)
Located in intron of:ENSTBEG00000013721
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL15
Ensembl ID:ENSTBEG00000009843
Aliases:None
Description:ribosomal protein L15 [Source:HGNC Symbol;Acc:10306]


Retrocopy-Parental alignment summary:






>retro_tbel_992
CAGCTCTAGGTGCTGCACTGGGCGCCCCACCCCACCTGGCCCGATAAAGCGTGCAGACTGGGCTACAAGCCGAAGCAAGG
TTATGTGATACAAAGGATTCCTGTGCGGCATGGAGGCTGCAAACGCCCAGTCCCCAAGGGTGCAACCTATGGCAAGCCTG
TCCATCATGGTGTTAACCAGCTCAAGTTTGCTAGCAGCCTCCAGTCTGTTGCAGAGGAGCGAGCTGGACAACACTGTGAG
GGTCTTAAGAGCCCTGAATTCTTACTGGGTGGGTGAAGATTCCACATGCAAATTCTTGGAGGTTATCCTCATTGATCAAT
TCCATAAAGCTATCAGAAGAAACCCTGACACCCAATGGATTACCAAGCCAGTCCACAAACACAGGGAGATGTGCGGGCTG
ACATCCGCCAGCCACAAGAGCCCAGGCCTTGGAAAAGGCCCCAAGTTCCACCACACTGTTGCAGCTTGGAGAAGG

ORF - retro_tbel_992 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.76 %
Parental protein coverage: 72.81 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSV
QL..LH.AP.PT.PDKA.RLGYK.KQGYVI.RI.VR.GG.KRPVPKGATYGKPVHHGVNQLKFA.SLQSV
RetrocopyQL*VLHWAPHPTWPDKACRLGYKPKQGYVIQRIPVRHGGCKRPVPKGATYGKPVHHGVNQLKFASSLQSV
ParentalAEERAGRHC-GALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRK
AEERAG.HC...LR.LNSYWVGEDST.KF.EVILID.FHKAIRRNPDTQWITKPVHKHREM.GLTSA..K
RetrocopyAEERAGQHC>RVLRALNSYWVGEDSTCKFLEVILIDQFHKAIRRNPDTQWITKPVHKHREMCGLTSASHK
ParentalSRGLGKGHKFHHTIGGSRR
S.GLGKG.KFHHT....RR
RetrocopySPGLGKGPKFHHTVAAWRR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_992 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_992 was not experimentally validated.

Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 99 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000330802 retrocopies
Erinaceus europaeus ENSEEUG000000112865 retrocopies
Echinops telfairi ENSETEG000000150444 retrocopies
Macropus eugenii ENSMEUG000000145223 retrocopies
Macaca mulatta ENSMMUG000000063531 retrocopy
Mustela putorius furoENSMPUG000000121487 retrocopies
Mus musculus ENSMUSG000000124052 retrocopies
Otolemur garnettii ENSOGAG0000001305613 retrocopies
Procavia capensis ENSPCAG000000119951 retrocopy
Rattus norvegicus ENSRNOG0000000814017 retrocopies
Sus scrofa ENSSSCG000000280795 retrocopies
Tupaia belangeri ENSTBEG00000009843 34 retrocopies
Tursiops truncatus ENSTTRG000000072445 retrocopies



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