RetrogeneDB ID: | retro_tbel_4417 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_81855:1551..2088(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000013512 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSTBEG00000009843 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 82.12 % |
Parental protein coverage: | 82.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | YIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPV |
YIQEL..KKQSDVMRFLL...CWQY.QLSAL.RAP.PTR.DK...LGY..K.GYVIYRIRV..GG.K.PV | |
Retrocopy | YIQELGQKKQSDVMRFLLSACCWQYHQLSALYRAPGPTRRDKMCTLGYRVKHGYVIYRIRVQHGGHKCPV |
Parental | PKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRN |
PKGATYGKPVH.GVNQLKFA.SLQSVAEERAG.HCGALRVL.SYWVGEDSTYKFF.V.LID.F.K.IRRN | |
Retrocopy | PKGATYGKPVHRGVNQLKFAGSLQSVAEERAGHHCGALRVLISYWVGEDSTYKFFKVTLIDTFNKTIRRN |
Parental | PDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTI |
..TQWITKPVHKHREMRGLTSAGR.S.GLGKGHKFHHTI | |
Retrocopy | SATQWITKPVHKHREMRGLTSAGR*S*GLGKGHKFHHTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |