RetrogeneDB ID: | retro_rnor_2249 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:121728393..121729006(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl15 | ||
Ensembl ID: | ENSRNOG00000008140 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:P61314] |
Percent Identity: | 85.99 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
M.AYKYI...WR.KQSD.MRFLLRVRCWQYR.LSAL.RAPRPT.PDKA.RLGYKAKQ.YVIYRIRVR.GG | |
Retrocopy | MSAYKYIRDMWREKQSDMMRFLLRVRCWQYR*LSALYRAPRPTGPDKAQRLGYKAKQDYVIYRIRVRLGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSY-WVGEDSTYKFFEVILIDPFH |
.KRPVPKGATYGKPVHH.VNQLKFA.SLQSVAEERAG.HCGALRVLNSY.WVGEDSTY..FEVILIDPFH | |
Retrocopy | HKRPVPKGATYGKPVHHRVNQLKFA*SLQSVAEERAGHHCGALRVLNSY>WVGEDSTYRCFEVILIDPFH |
Parental | KAIRRNPDTQWITKPVHKHREMRGLTSAG-RKSRGLGKGHKFHHTIGGSR-RAAWRRRNTLQLHRYR |
KAI.RNPDTQWITKPVHKHREMRGLTSAG..KS.GLGKGH.FHHTIGGS...AAWRRRNTLQL..YR | |
Retrocopy | KAIKRNPDTQWITKPVHKHREMRGLTSAG>HKSLGLGKGHEFHHTIGGSQ<GAAWRRRNTLQLRCYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 65 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 79 .83 RPM |
SRP017611_liver | 0 .00 RPM | 65 .62 RPM |