RetrogeneDB ID: | retro_btau_152 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 23:32294947..32295562(-) | ||
Located in intron of: | ENSBTAG00000016549 | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000038783 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSBTAG00000033080 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:Q5EAD6] |
Percent Identity: | 99.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG | |
Retrocopy | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK | |
Retrocopy | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
Parental | AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHT.GGSRRAAWRRRNTLQLHRYR | |
Retrocopy | AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTVGGSRRAAWRRRNTLQLHRYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 26 .17 RPM |
ERP005899_muscle | 0 .11 RPM | 465 .86 RPM |
SRP017611_brain | 0 .00 RPM | 45 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 55 .89 RPM |
SRP017611_liver | 0 .00 RPM | 34 .28 RPM |
SRP030211_testis | 0 .03 RPM | 106 .08 RPM |