RetrogeneDB ID: | retro_rnor_66 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:63675309..63675924(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000023181 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl15 | ||
Ensembl ID: | ENSRNOG00000008140 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:P61314] |
Percent Identity: | 91.18 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
MGAYKYIQELWRKKQSDVM.FLLRV.CW.YRQLS..HRA.RPTRPDKARRLGYKAKQGYVIYRIRVR..G | |
Retrocopy | MGAYKYIQELWRKKQSDVMCFLLRVYCWKYRQLSEMHRALRPTRPDKARRLGYKAKQGYVIYRIRVRLSG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
RKRPVPKGATYGKPVHHGV.QLKFARSLQSV.EERAGRHCGA.RVLNSYWVGEDSTYKFFEVILIDP.HK | |
Retrocopy | RKRPVPKGATYGKPVHHGVKQLKFARSLQSVVEERAGRHCGAWRVLNSYWVGEDSTYKFFEVILIDPSHK |
Parental | AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
AIRRNPDTQWI.KPVHKHREMRGLTSAGRKSR.LGKGHKFHHT.GGSRRAAWR...TLQLHRYR | |
Retrocopy | AIRRNPDTQWIAKPVHKHREMRGLTSAGRKSRCLGKGHKFHHTVGGSRRAAWRKHITLQLHRYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 65 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 79 .83 RPM |
SRP017611_liver | 0 .00 RPM | 65 .62 RPM |