RetrogeneDB ID: | retro_rnor_2313 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:103313012..103313526(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000030557 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl15 | ||
Ensembl ID: | ENSRNOG00000008140 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:P61314] |
Percent Identity: | 81.4 % |
Parental protein coverage: | 83.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SALHRAPRPTRPDKARR-LGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVA |
S.LH....PT......R.LGYKAKQG.V.YRI.V.RGGRK.P.PKGATYGKPVHHGVNQL.FARSLQSV. | |
Retrocopy | SSLHCTELPTPSSLIKR>LGYKAKQGCVLYRISVCRGGRKCPLPKGATYGKPVHHGVNQLNFARSLQSVT |
Parental | EERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSR |
EERAG.HCGALRVLNSYWVGED.TYKFFEVILIDPFHKAIRR.PDTQWITKPVHKHREM.GLTS.G.KS. | |
Retrocopy | EERAGHHCGALRVLNSYWVGEDFTYKFFEVILIDPFHKAIRRKPDTQWITKPVHKHREMCGLTSVGCKSH |
Parental | GLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
G.GKGHKFHHTIGGS.RAA.RR.NTLQLH.YR | |
Retrocopy | GFGKGHKFHHTIGGSCRAA*RRGNTLQLHCYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 65 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 79 .83 RPM |
SRP017611_liver | 0 .00 RPM | 65 .62 RPM |