RetrogeneDB ID: | retro_sscr_448 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 14:112924515..112924908(-) | ||
Located in intron of: | ENSSSCG00000010465 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000028079 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein L15 (RPL15), mRNA. [Source:RefSeq mRNA;Acc:NM_001244065] |
Percent Identity: | 84.73 % |
Parental protein coverage: | 64.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
MGAYKYIQELWRKKQSD.M.FLL.VRCWQY.QLSA.HRAP.PTRPD.A.RLGYKAK.GYVIYRI.V.RGG | |
Retrocopy | MGAYKYIQELWRKKQSDIMCFLLQVRCWQYHQLSAFHRAPCPTRPDRASRLGYKAKEGYVIYRICVHRGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFE |
RK.PVPKGAT.GKPVHHGVNQLKFA.SLQSVAEERAG.HCG.L.VLNSYWVGEDS.YKF.. | |
Retrocopy | RKCPVPKGATNGKPVHHGVNQLKFAQSLQSVAEERAGHHCGVLKVLNSYWVGEDSMYKFID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 0 .27 RPM |
SRP014902_testis | 0 .00 RPM | 0 .00 RPM |
SRP018288_heart | 0 .05 RPM | 4 .14 RPM |
SRP018288_kidney | 0 .10 RPM | 5 .71 RPM |
SRP018288_liver | 0 .16 RPM | 2 .08 RPM |
SRP018288_lung | 0 .00 RPM | 0 .51 RPM |
SRP018856_adipose | 0 .00 RPM | 2 .73 RPM |
SRP035408_brain | 0 .00 RPM | 2 .79 RPM |
SRP035408_liver | 0 .09 RPM | 1 .61 RPM |