Parental gene:

ENSSSCG00000028079

Aliases:None
Description:Sus scrofa ribosomal protein L15 (RPL15), mRNA. [Source:RefSeq mRNA;Acc:NM_001244065]
Organism:Pig (Sus scrofa)
Coordinates:13:12255864..12257346(+)


>ENSSSCG00000028079
ATGGGCGCTTACAAGTACATCCAGGAGCTATGGAGGAAGAAGCAGTCCGACGTCATGCGCTTTCTCCTCCGGGTGCGCTG
CTGGCAGTACCGCCAGCTCTCCGCTCTCCACAGGGCCCCCCGCCCCACCCGGCCCGATAAGGCGCGCAGGCTGGGATACA
AGGCCAAGCAAGGTTATGTCATATATCGGATTCGTGTGCGCCGCGGTGGCCGCAAACGCCCAGTTCCTAAGGGTGCCACC
TACGGCAAGCCTGTCCACCATGGTGTCAACCAGCTAAAGTTTGCTCGAAGCCTTCAGTCTGTTGCCGAGGAGCGAGCTGG
ACGCCACTGTGGGGCTCTGAGAGTCCTGAATTCTTACTGGGTTGGTGAAGATTCTACATACAAATTCTTTGAGGTTATCC
TCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAGTGGATCACCAAACCAGTCCACAAGCATAGGGAG
ATGCGAGGGCTGACTTCTGCAGGCAGAAAGAGCCGCGGCCTTGGAAAGGGCCACAAGTTCCACCACACTATTGGTGGTTC
CCGCCGTGCAGCTTGGAGAAGGCGCAATACTCTCCAGCTCCACCGTTACCGCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 0 .27 RPM
SRP014902_testis 0 .00 RPM
SRP018288_heart 4 .14 RPM
SRP018288_kidney 5 .71 RPM
SRP018288_liver 2 .08 RPM
SRP018288_lung 0 .51 RPM
SRP018856_adipose 2 .73 RPM
SRP035408_brain 2 .79 RPM
SRP035408_liver 1 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000033080 possible_ortholog 2 retrogenes
retro_btau_152, retro_btau_201,
Canis familiaris ENSCAFG00000005764 ortholog_one2one 5 retrogenes
retro_cfam_1003, retro_cfam_1159, retro_cfam_1630, retro_cfam_572, retro_cfam_656,
Cavia porcellus ENSCPOG00000002253 possible_ortholog 4 retrogenes
retro_cpor_620, retro_cpor_807, retro_cpor_900, retro_cpor_978,
Erinaceus europaeus ENSEEUG00000011286 possible_ortholog 5 retrogenes
retro_eeur_200, retro_eeur_28, retro_eeur_400, retro_eeur_685, retro_eeur_694,
Echinops telfairi ENSETEG00000015044 possible_ortholog 4 retrogenes
retro_etel_1438, retro_etel_431, retro_etel_658, retro_etel_943,
Felis catus ENSFCAG00000026237 possible_ortholog 6 retrogenes
retro_fcat_1820, retro_fcat_285, retro_fcat_306, retro_fcat_610, retro_fcat_930, retro_fcat_985,
Homo sapiens ENSG00000174748 ortholog_one2many 14 retrogenes
retro_hsap_1294, retro_hsap_1804, retro_hsap_2160, retro_hsap_2870, retro_hsap_2927, retro_hsap_3095, retro_hsap_3422, retro_hsap_3661, retro_hsap_3792, retro_hsap_592, retro_hsap_631, retro_hsap_791, retro_hsap_930, retro_hsap_957,
Gorilla gorilla ENSGGOG00000024274 possible_ortholog 13 retrogenes
retro_ggor_1327, retro_ggor_1611, retro_ggor_1716, retro_ggor_1989, retro_ggor_2029, retro_ggor_2125, retro_ggor_2314, retro_ggor_2473, retro_ggor_39, retro_ggor_524, retro_ggor_552, retro_ggor_654, retro_ggor_771,
Loxodonta africana ENSLAFG00000004155 possible_ortholog 1 retrogene
retro_lafr_677,
Macropus eugenii ENSMEUG00000014522 possible_ortholog 3 retrogenes
retro_meug_1678, retro_meug_2006, retro_meug_2112,
Myotis lucifugus ENSMLUG00000013809 possible_ortholog 15 retrogenes
retro_mluc_1357, retro_mluc_1709, retro_mluc_1720, retro_mluc_2052, retro_mluc_2142, retro_mluc_2454, retro_mluc_425, retro_mluc_623, retro_mluc_701, retro_mluc_714, retro_mluc_748, retro_mluc_749, retro_mluc_907, retro_mluc_943, retro_mluc_99,
Macaca mulatta ENSMMUG00000006353 possible_ortholog 1 retrogene
retro_mmul_209,
Monodelphis domestica ENSMODG00000014880 ortholog_one2many 3 retrogenes
retro_mdom_1315, retro_mdom_1803, retro_mdom_918,
Mustela putorius furo ENSMPUG00000012148 ortholog_one2one 7 retrogenes
retro_mputfur_1011, retro_mputfur_1252, retro_mputfur_1291, retro_mputfur_314, retro_mputfur_346, retro_mputfur_658, retro_mputfur_669,
Mus musculus ENSMUSG00000012405 possible_ortholog 2 retrogenes
retro_mmus_118, retro_mmus_8,
Nomascus leucogenys ENSNLEG00000003580 ortholog_one2one 1 retrogene
retro_nleu_80,
Oryctolagus cuniculus ENSOCUG00000010961 possible_ortholog 2 retrogenes
retro_ocun_215, retro_ocun_228,
Otolemur garnettii ENSOGAG00000013056 ortholog_one2one 13 retrogenes
retro_ogar_1066, retro_ogar_1129, retro_ogar_1182, retro_ogar_1453, retro_ogar_1483, retro_ogar_1629, retro_ogar_1809, retro_ogar_2378, retro_ogar_270, retro_ogar_3058, retro_ogar_3096, retro_ogar_3349, retro_ogar_903,
Procavia capensis ENSPCAG00000011995 possible_ortholog 1 retrogene
retro_pcap_265,
Rattus norvegicus ENSRNOG00000008140 ortholog_one2one 17 retrogenes
retro_rnor_1046, retro_rnor_1409, retro_rnor_1497, retro_rnor_1685, retro_rnor_1690, retro_rnor_1785, retro_rnor_2042, retro_rnor_2249, retro_rnor_2313, retro_rnor_2451, retro_rnor_2473, retro_rnor_2786, retro_rnor_2997, retro_rnor_428, retro_rnor_66, retro_rnor_710, retro_rnor_844,
Ictidomys tridecemlineatus ENSSTOG00000011153 possible_ortholog 4 retrogenes
retro_itri_1445, retro_itri_1838, retro_itri_479, retro_itri_785,
Tupaia belangeri ENSTBEG00000009843 possible_ortholog 34 retrogenes
retro_tbel_1031, retro_tbel_1072, retro_tbel_1322, retro_tbel_1346, retro_tbel_1363, retro_tbel_1524, retro_tbel_1668, retro_tbel_1931, retro_tbel_1980, retro_tbel_2035, retro_tbel_2212, retro_tbel_2270, retro_tbel_2453, retro_tbel_2634, retro_tbel_2818, retro_tbel_3196, retro_tbel_3208, retro_tbel_3387, retro_tbel_3449, retro_tbel_352, retro_tbel_3936, retro_tbel_4079, retro_tbel_4417, retro_tbel_4433, retro_tbel_4477, retro_tbel_4564, retro_tbel_4705, retro_tbel_476, retro_tbel_555, retro_tbel_727, retro_tbel_746, retro_tbel_84, retro_tbel_929, retro_tbel_992,
Tursiops truncatus ENSTTRG00000007244 ortholog_one2many 5 retrogenes
retro_ttru_1305, retro_ttru_1358, retro_ttru_280, retro_ttru_920, retro_ttru_987,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_448 84.73 64.22
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2. retro_sscr_968 88.35 99.51
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3. retro_sscr_997 75.48 99.51
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4. retro_sscr_1219 60.61 79.90
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5. retro_sscr_1225 60.61 79.90
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Download FASTA sequences of all ENSSSCG00000028079 retrocopies