RetrogeneDB ID: | retro_hsap_3021 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:4896100..4896924(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000251587 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSG00000134333 | ||
Aliases: | LDHA, GSD11, HEL-S-133P, LDH1, LDHM | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 85.92 % |
Parental protein coverage: | 76.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IPFGSKSNMATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEM |
IPFG.KSNMA.LKDQLI.NLLKEEQTPQN.I.VV.VGAV.MACAISIL.KDLADELALVDV.EDKLKGEM | |
Retrocopy | IPFGLKSNMAILKDQLIHNLLKEEQTPQNMIIVVEVGAVHMACAISILVKDLADELALVDVMEDKLKGEM |
Parental | MDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP-NC |
M.LQHGSLFL..PKIVSGKDYNVTANSKLVIITAGA.QQEGES.LN.VQ.NVNIFKFII.NVVKYSP.NC | |
Retrocopy | MNLQHGSLFLGMPKIVSGKDYNVTANSKLVIITAGAHQQEGESSLNWVQCNVNIFKFIISNVVKYSP<NC |
Parental | KLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVW |
KLLIV.NPVDILT.VAWKISGFPK.RVIGSGC.LDSA.FRYLM.ERLGVHPLSCH..VLGEHG.S.V.VW | |
Retrocopy | KLLIVLNPVDILTCVAWKISGFPKSRVIGSGCSLDSAQFRYLMEERLGVHPLSCHR*VLGEHGYSTVSVW |
Parental | SGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLR |
SG.NVAGVSL.TLHPDLGTD.DKE.WKEV.KQVV..AYEVIKLKGYTSWA.GLSVADLAES.M.NLR | |
Retrocopy | SGVNVAGVSLRTLHPDLGTDTDKEWWKEVQKQVVKNAYEVIKLKGYTSWAFGLSVADLAESMM-NLR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 677 .74 RPM |
bodymap2_adrenal | 0 .00 RPM | 652 .87 RPM |
bodymap2_brain | 0 .00 RPM | 293 .75 RPM |
bodymap2_breast | 0 .00 RPM | 877 .38 RPM |
bodymap2_colon | 0 .00 RPM | 653 .53 RPM |
bodymap2_heart | 0 .00 RPM | 275 .86 RPM |
bodymap2_kidney | 0 .00 RPM | 797 .94 RPM |
bodymap2_liver | 0 .00 RPM | 1282 .88 RPM |
bodymap2_lung | 0 .00 RPM | 554 .06 RPM |
bodymap2_lymph_node | 0 .00 RPM | 571 .34 RPM |
bodymap2_ovary | 0 .00 RPM | 423 .80 RPM |
bodymap2_prostate | 0 .00 RPM | 470 .43 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 208 .47 RPM |
bodymap2_testis | 0 .00 RPM | 412 .13 RPM |
bodymap2_thyroid | 0 .00 RPM | 621 .92 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 246 .29 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2039 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |