RetrogeneDB ID: | retro_amel_1332 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193209.1:404477..404954(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000017896 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSAMEG00000014027 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.61 % |
Parental protein coverage: | 79.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY |
ISGNFYR.KLKYLAFL.K.MNTNPS.GPYHFR....IFWRTV..ML.HKTK.GQAALD..KVFDG.PPPY | |
Retrocopy | ISGNFYRIKLKYLAFLHKHMNTNPSHGPYHFR--TLIFWRTVGDMLFHKTK*GQAALDHFKVFDGLPPPY |
Parental | DKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAE |
DKKKRMV.P..LKVV.LKPT.KFAYLGRLAHEVGWKYQAVTATLEEKRKEK.KIHY.K.KQL.RL.KQA. | |
Retrocopy | DKKKRMVAPVVLKVVHLKPTWKFAYLGRLAHEVGWKYQAVTATLEEKRKEKTKIHYQKEKQLTRLWKQAD |
Parental | KNVEKKIDKYTEVLKTHGLLV |
KNVEKK.DKYTEVLKTH.LLV | |
Retrocopy | KNVEKKTDKYTEVLKTHRLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014027 | 2 retrocopies |
retro_amel_1332 , retro_amel_1720,
|
Bos taurus | ENSBTAG00000005296 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000029892 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000072 | 16 retrocopies | |
Echinops telfairi | ENSETEG00000017076 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000016213 | 3 retrocopies | |
Mus musculus | ENSMUSG00000074129 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000025258 | 9 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010958 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000020618 | 10 retrocopies | |
Sus scrofa | ENSSSCG00000003166 | 4 retrocopies |