RetrogeneDB ID: | retro_ocun_972 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 18:39551780..39552001(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSOCUG00000025258 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 74.67 % |
Parental protein coverage: | 62.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GMLPHKTKRGQAA-LDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTA |
G.LP.KT..GQAA.LDRL.VF.GIPPPYDKKK.MVVPAALK...LKPTRK.AYLG.LAHE.GW.YQA..A | |
Retrocopy | GALPRKTQWGQAA<LDRLRVFNGIPPPYDKKKWMVVPAALKAMCLKPTRKPAYLGHLAHEAGWRYQAAAA |
Parental | TLEEK |
.LEE. | |
Retrocopy | ILEEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 131 .02 RPM |
SRP017611_kidney | 0 .10 RPM | 349 .17 RPM |
SRP017611_liver | 0 .31 RPM | 66 .52 RPM |