RetrogeneDB ID: | retro_ocun_1038 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:41526117..41526376(+) | ||
Located in intron of: | ENSOCUG00000000034 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSOCUG00000025258 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 63.74 % |
Parental protein coverage: | 76.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLE-EKRKEKAKIHYRKKKQLMRLRKQAE |
..K.M.VPA.LKVV.LKP.RK.AYLG.LAHEVGW.YQAVT...E.EK.K....IHY.KKKQ.M.L.K..E | |
Retrocopy | QEKQMAVPAVLKVVHLKPMRKSAYLGHLAHEVGWMYQAVTREEE>EKAK----IHYWKKKQPMKLWKLEE |
Parental | KNVEKKISKFTDVLKTHGLLV |
K.V..KI.K.TDVL.T.GL.V | |
Retrocopy | KKVY*KINKITDVLRTRGLQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 131 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 349 .17 RPM |
SRP017611_liver | 0 .00 RPM | 66 .52 RPM |