RetrogeneDB ID: | retro_ocun_786 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:159366894..159367205(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSOCUG00000025258 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 68.57 % |
Parental protein coverage: | 88.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | DRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYR |
D.....DGI..P.DKKK.MVVP.ALK...LK..R.FAYL..LA.EVGWKYQAVTA.LEEKRKEKAKI.Y. | |
Retrocopy | DWATLLDGILAP*DKKKWMVVPVALKAACLKSNRNFAYLVSLADEVGWKYQAVTAMLEEKRKEKAKIRYQ |
Parental | KKKQLMRL-RKQAEKNVEKKISKFTDVLKTHGLLV |
KKKQLM...RKQA..NVEK.I..FT.VLKTHG.L. | |
Retrocopy | KKKQLMWI<RKQAKSNVEKNINGFTEVLKTHGPLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 131 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 349 .17 RPM |
SRP017611_liver | 0 .00 RPM | 66 .52 RPM |