RetrogeneDB ID: | retro_amel_1720 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL194087.1:339120..339511(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSAMEG00000014027 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.88 % |
Parental protein coverage: | 65.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | HFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAAL-KVVRLKPT-RKFAYLG |
.F.APS.IFW.TVR.MLPHKTK..QAAL..LKVF.GI.P.YD.KK..VVPA.L.K.V.LKPT.R.FAYL. | |
Retrocopy | NFKAPSHIFWQTVRSMLPHKTKKSQAALNHLKVFAGILPLYDNKKWIVVPAVL<KAVCLKPT<RNFAYLC |
Parental | RLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGLLV |
.LAHEV.WK.QAV.ATLEEKRKEK.K.HY.KKKQLMRL.KQ..KNV.KKI.KYTEVLKTH.LLV | |
Retrocopy | HLAHEVAWKHQAVIATLEEKRKEKEKSHY*KKKQLMRLWKQSKKNV-KKIEKYTEVLKTHRLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014027 | 2 retrocopies |
retro_amel_1332, retro_amel_1720 ,
|
Bos taurus | ENSBTAG00000005296 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000029892 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000072 | 16 retrocopies | |
Echinops telfairi | ENSETEG00000017076 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000016213 | 3 retrocopies | |
Mus musculus | ENSMUSG00000074129 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000025258 | 9 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010958 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000020618 | 10 retrocopies | |
Sus scrofa | ENSSSCG00000003166 | 4 retrocopies |