RetrogeneDB ID: | retro_cpor_172 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_1:32240947..32241618(+) | ||
Located in intron of: | ENSCPOG00000007040 | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000020409 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1E1 | ||
Ensembl ID: | ENSCPOG00000024559 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.63 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSLSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI |
MSLSDA.VQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI | |
Retrocopy | MSLSDANVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI |
Parental | KMSNLMNQARLKVLRARDDLITDLLTEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQD |
KMSNLMNQARLKVLRA.DDLITDLLTEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIV.CRKQD | |
Retrocopy | KMSNLMNQARLKVLRASDDLITDLLTEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVQCRKQD |
Parental | FPLVKAAVQKAIPMYKIATKKDVDVQIDQEAYLPEDIAGGVEIYNGDRKIK-VSNTLESRLDLIAQQMMP |
FPLVK.AVQKAIPMYKIATKKDVDVQ.DQE.YLPED..G......G..K.K.VSNTLESRLDLIAQQMMP | |
Retrocopy | FPLVKVAVQKAIPMYKIATKKDVDVQTDQETYLPED--GELKCIMGIAK*K<VSNTLESRLDLIAQQMMP |
Parental | EVRGALFGANANRKFLD |
EV.GALFGANANRKFLD | |
Retrocopy | EVWGALFGANANRKFLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .40 RPM | 133 .44 RPM |
SRP017611_kidney | 6 .80 RPM | 134 .94 RPM |
SRP017611_liver | 2 .26 RPM | 48 .92 RPM |
SRP040447_lung | 2 .02 RPM | 61 .16 RPM |
SRP040447_skeletal_muscle | 2 .33 RPM | 35 .91 RPM |