RetrogeneDB ID: | retro_ecab_84 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 15:52430436..52431117(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000013717 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1E1 | ||
Ensembl ID: | ENSECAG00000016487 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857] |
Percent Identity: | 77.68 % |
Parental protein coverage: | 99.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI |
MALSD.DVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI | |
Retrocopy | MALSDVDVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI |
Parental | QMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTARYQVLLDGLVLQGLYQLLEPRMIVRCKKQD |
QMS...NQARLKVLRARDDLI..LLNEAK.RLS.VV.D...YQ.LLD.LVLQGL..LLEP..IVRC..QD | |
Retrocopy | QMSTIKNQARLKVLRARDDLISELLNEAKLRLSRVVADPEIYQGLLDQLVLQGLLRLLEPVVIVRCRPQD |
Parental | FPLVKAAVQKAIPMYKIATKRDVDVQIDQEAYLPEEIAGGVEIYNGDRKIKVCNTLESRLDLIAQQMMPE |
..LV.AAVQKAIP.Y.......V.V..DQE..L....AGGVE.Y.G...IKV.NTLESRLDL.AQQ.MPE | |
Retrocopy | LLLVEAAVQKAIPDYISVSQKRVEVRVDQEVHLAMMAAGGVEVYSGNQRIKVSNTLESRLDLLAQQKMPE |
Parental | VRGALFGANANRKF |
.R.ALFGANANRKF | |
Retrocopy | IRKALFGANANRKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 13 .52 RPM |
SRP021940_cerebellum | 0 .05 RPM | 91 .66 RPM |
SRP021940_embryo | 0 .03 RPM | 28 .56 RPM |
SRP021940_placental_villous | 0 .05 RPM | 72 .55 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 18 .06 RPM |
SRP021940_testis | 23 .08 RPM | 33 .38 RPM |