RetrogeneDB ID: | retro_mmul_370 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:45800079..45800758(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.574 | ||
Ensembl ID: | ENSMMUG00000021477 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MALSDADVQKQVRGLVGWQDSVSKKKKEISVHKQAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKK |
MALSDAD.QKQV.............K.E......AEEEFNIEKGRLVQTQRLKIMEYYE.KEKQIEQQKK | |
Retrocopy | MALSDADMQKQVKHMMAFIEQEAN*KAE-EIDAKAEEEFNIEKGRLVQTQRLKIMEYYETKEKQIEQQKK |
Parental | IQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGL-YQLLEPRMIVRCRK |
IQMSNLMNQARLK.LRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGL.YQLLE..MIVRCRK | |
Retrocopy | IQMSNLMNQARLKILRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGL>YQLLEHQMIVRCRK |
Parental | QDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMM |
QDFPLVKAAVQKAIPMYKIATKN.VDVQIDQESYLPEDIAGGVEIYNGD.KIKVSNT..SRLDLIAQQMM | |
Retrocopy | QDFPLVKAAVQKAIPMYKIATKNNVDVQIDQESYLPEDIAGGVEIYNGDHKIKVSNTPKSRLDLIAQQMM |
Parental | PEVRGALFGANANRKFLD |
PEVRGALFGANA.RKF.D | |
Retrocopy | PEVRGALFGANASRKF*D |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 5 .83 RPM | 77 .99 RPM |
SRP007412_brain_prefrontal_cortex | 3 .73 RPM | 101 .94 RPM |
SRP007412_cerebellum | 5 .30 RPM | 60 .31 RPM |
SRP007412_heart | 1 .88 RPM | 24 .50 RPM |
SRP007412_kidney | 5 .05 RPM | 65 .96 RPM |
SRP007412_liver | 0 .55 RPM | 14 .01 RPM |
SRP007412_testis | 0 .57 RPM | 11 .16 RPM |