RetrogeneDB ID: | retro_fcat_61 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:68507898..68508579(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000011593 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1E1 | ||
Ensembl ID: | ENSFCAG00000008081 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857] |
Percent Identity: | 77.23 % |
Parental protein coverage: | 99.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI |
MALSD.DVQKQIKHMMAFIEQEANEKAEEIDAK.EEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI | |
Retrocopy | MALSDVDVQKQIKHMMAFIEQEANEKAEEIDAKSEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI |
Parental | QMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQD |
QMS...NQARLKVLRARDDLI..LL..AK.RLS..V.D...YQ.LLD.LVLQGL..LLEP..IVRCR.QD | |
Retrocopy | QMSTMRNQARLKVLRARDDLISELLSDAKLRLSGIVADPAIYQGLLDKLVLQGLLRLLEPVAIVRCRPQD |
Parental | FPLVKAAVQKAIPMYKIATKKDVDVQIDQEAYLPEEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPE |
..LV.AAVQKAIP.Y.....K.V.VQ.DQE..L....AGGVE.Y.G...IKVSNTLESRLDL.AQQ.MP. | |
Retrocopy | LLLVEAAVQKAIPEYMMVSQKCVEVQVDQEVHLATNTAGGVEVYSGNQRIKVSNTLESRLDLLAQQKMPD |
Parental | VRGALFGANANRKF |
.R.ALFGANANRKF | |
Retrocopy | IRKALFGANANRKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .34 RPM | 215 .20 RPM |
SRP017611_kidney | 2 .27 RPM | 126 .97 RPM |
SRP017611_liver | 0 .10 RPM | 25 .88 RPM |