Parental gene:

ATP6V1E1, ENSECAG00000016487

Aliases:None
Description:ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857]
Organism:Horse (Equus caballus)
Coordinates:6:27588004..27610376(+)


>ENSECAG00000016487
ATGGCCCTCAGCGATGCTGACGTGCAGAAGCAGATTAAGCATATGATGGCTTTCATTGAACAAGAAGCCAATGAGAAAGC
AGAAGAAATAGATGCTAAGGCAGAAGAAGAGTTCAACATTGAGAAAGGTCGTCTCGTGCAAACCCAAAGACTGAAGATTA
TGGAATACTATGAAAAGAAGGAAAAGCAGATTGAGCAGCAGAAGAAAATTCAGATGTCCAATTTGATGAATCAAGCAAGG
CTGAAAGTCCTCAGAGCGAGAGATGACCTTATTACAGACCTACTAAATGAAGCAAAACAGAGACTCAGCAAAGTGGTAAA
AGATACAGCCAGGTACCAAGTGCTGCTGGATGGACTGGTACTCCAGGGTTTGTACCAGTTGTTGGAGCCCCGAATGATTG
TTCGTTGCAAAAAACAGGATTTCCCTCTGGTAAAGGCTGCAGTGCAAAAAGCAATCCCTATGTACAAAATCGCCACCAAA
AGAGATGTCGATGTCCAAATTGATCAGGAGGCCTACCTGCCTGAAGAAATAGCTGGAGGAGTTGAGATCTATAATGGGGA
TCGTAAGATAAAGGTGTGCAATACCCTGGAGAGCCGGCTGGACCTCATAGCCCAGCAGATGATGCCAGAAGTGCGGGGAG
CCTTGTTTGGTGCAAATGCCAACAGGAAGTTTTTGGACTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 18 .06 RPM
SRP021940_embryo 28 .56 RPM
SRP021940_cerebellum 91 .66 RPM
SRP021940_testis 33 .38 RPM
SRP021940_placental_villous 72 .55 RPM
SRP021940_articular_cartilage 13 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017489 ortholog_one2one 2 retrogenes
Bos taurus ENSBTAG00000014238 ortholog_one2one 1 retrogene
Canis familiaris ENSCAFG00000016151 ortholog_one2many 7 retrogenes
Callithrix jacchus ENSCJAG00000017277 possible_ortholog 1 retrogene
Cavia porcellus ENSCPOG00000024559 ortholog_one2one 3 retrogenes
Echinops telfairi ENSETEG00000019283 ortholog_one2one 2 retrogenes
Felis catus ENSFCAG00000008081 ortholog_one2one 4 retrogenes
Homo sapiens ENSG00000131100 ortholog_one2one 3 retrogenes
Gorilla gorilla ENSGGOG00000015027 ortholog_one2one 2 retrogenes
Loxodonta africana ENSLAFG00000003802 ortholog_one2one 4 retrogenes
Microcebus murinus ENSMICG00000010643 ortholog_one2one 6 retrogenes
Myotis lucifugus ENSMLUG00000014876 ortholog_one2many 2 retrogenes
Macaca mulatta ENSMMUG00000021477 ortholog_one2one 4 retrogenes
Monodelphis domestica ENSMODG00000018452 ortholog_many2many 4 retrogenes
Mustela putorius furo ENSMPUG00000018109 ortholog_one2many 2 retrogenes
Mus musculus ENSMUSG00000019210 ortholog_one2one 1 retrogene
Nomascus leucogenys ENSNLEG00000007839 ortholog_one2one 1 retrogene
Otolemur garnettii ENSOGAG00000013886 ortholog_one2one 5 retrogenes
Procavia capensis ENSPCAG00000016094 ortholog_one2one 1 retrogene
Pongo abelii ENSPPYG00000011560 ortholog_one2one 1 retrogene
Rattus norvegicus ENSRNOG00000011905 ortholog_one2many 1 retrogene
Sarcophilus harrisii ENSSHAG00000008300 ortholog_one2many 2 retrogenes
Sus scrofa ENSSSCG00000000767 ortholog_one2one 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000022031 ortholog_one2one 3 retrogenes
Tarsius syrichta ENSTSYG00000010679 ortholog_one2one 5 retrogenes
Tursiops truncatus ENSTTRG00000015931 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_84 77.68 99.12
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2. retro_ecab_165 79.65 100.00
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Download FASTA sequences of all ENSECAG00000016487 retrocopies