RetrogeneDB ID:

retro_mmur_886

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_11959:19641..19996(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP6V1E1
Ensembl ID:ENSMICG00000010643
Aliases:None
Description:ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857]


Retrocopy-Parental alignment summary:






>retro_mmur_886
ATGGCCCTCAGCGATGCTGATGTGCAAAAGCAGATTAAGCATATGATGGCTTTCATTGAACAAGAAGCCAGTGAAAAAGT
AGAAAAATAGATGCAAAGGCAGAAGAATTCACCATTGAGAAAGGTCGGCTTGTGCAAACCCAAAGACTGAAGATTATGGA
ATACTATGAGAAGAAAGAGAAGCAGATTGAGCAGCAGAAGAAAATGTTCAATTTGGTGAATCAAGCAAGGCTCAGAGTCC
TCAAAGCAAGAGATGACCTTATCACAGACCTACTAGATGAAGCAAAACAGAGACTCAACAAGGTGGTAAAAGACACAAAA
GGTACCAGGTGCTGCTGGATGGACTGGTCCTCCAG

ORF - retro_mmur_886 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.42 %
Parental protein coverage: 53.98 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMALSDADVQKQIKHMMAFIEQEANEKAEE-IDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKK
MALSDADVQKQIKHMMAFIEQEA.EK.E..IDAKAEE.F.IEKGRLVQTQRLKIMEYYEKKEKQIEQQKK
RetrocopyMALSDADVQKQIKHMMAFIEQEASEKVEK<IDAKAEE-FTIEKGRLVQTQRLKIMEYYEKKEKQIEQQKK
ParentalIQMSNLMNQXXXXXXXXXXXXXXDLLNEAKQRLSKVVKDT-TRYQVLLDGLVLQ
..M.NL.NQ..............DLL.EAKQRL.KVVKDT..RYQVLLDGLVLQ
Retrocopy--MFNLVNQARLRVLKARDDLITDLLDEAKQRLNKVVKDT<KRYQVLLDGLVLQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_886 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_886 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 27 parental genes, and 73 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000174892 retrocopies
Bos taurus ENSBTAG000000142381 retrocopy
Canis familiaris ENSCAFG000000161517 retrocopies
Callithrix jacchus ENSCJAG000000172771 retrocopy
Cavia porcellus ENSCPOG000000245593 retrocopies
Equus caballus ENSECAG000000164872 retrocopies
Echinops telfairi ENSETEG000000192832 retrocopies
Felis catus ENSFCAG000000080814 retrocopies
Homo sapiens ENSG000001311003 retrocopies
Gorilla gorilla ENSGGOG000000150272 retrocopies
Loxodonta africana ENSLAFG000000038024 retrocopies
Microcebus murinus ENSMICG00000010643 6 retrocopies
Myotis lucifugus ENSMLUG000000148762 retrocopies
Macaca mulatta ENSMMUG000000214774 retrocopies
Monodelphis domestica ENSMODG000000184524 retrocopies
Mustela putorius furoENSMPUG000000181092 retrocopies
Mus musculus ENSMUSG000000192101 retrocopy
Nomascus leucogenys ENSNLEG000000078391 retrocopy
Otolemur garnettii ENSOGAG000000138865 retrocopies
Procavia capensis ENSPCAG000000160941 retrocopy
Pongo abelii ENSPPYG000000115601 retrocopy
Rattus norvegicus ENSRNOG000000119051 retrocopy
Sarcophilus harrisii ENSSHAG000000083002 retrocopies
Sus scrofa ENSSSCG000000007673 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000220313 retrocopies
Tarsius syrichta ENSTSYG000000106795 retrocopies
Tursiops truncatus ENSTTRG000000159311 retrocopy



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