RetrogeneDB ID: | retro_cpor_76 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_18:30449792..30450473(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000019930 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1E1 | ||
Ensembl ID: | ENSCPOG00000024559 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.23 % |
Parental protein coverage: | 99.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSLSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI |
M.L.DADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQ.QRLKIMEYYEKKEKQIEQQKKI | |
Retrocopy | MALTDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQSQRLKIMEYYEKKEKQIEQQKKI |
Parental | KMSNLMNQARLKVLRARDDLITDLLTEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQD |
..S...NQARLKVL.ARDDLI..LL.EAK.RLS..V..T..YQ.LLD.LVLQGL..LLEP.MIVRCR.QD | |
Retrocopy | QLSTMRNQARLKVLTARDDLISELLSEAKLRLSRIVANTVVYQKLLDQLVLQGLLRLLEPMMIVRCRPQD |
Parental | FPLVKAAVQKAIPMYKIATKKDVDVQIDQEAYLPEDIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPE |
..LV.AAVQKAIP.Y..A..K.V.VQID.E..LP...AGGVEIY.G...IKVSNTLESRL.L.A.Q.MPE | |
Retrocopy | CFLVQAAVQKAIPEYMMASQKQVLVQIDHETHLPRYAAGGVEIYSGNQMIKVSNTLESRLELSARQKMPE |
Parental | VRGALFGANANRKF |
.R.ALFGANANRKF | |
Retrocopy | IRTALFGANANRKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .46 RPM | 133 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 134 .94 RPM |
SRP017611_liver | 0 .00 RPM | 48 .92 RPM |
SRP040447_lung | 0 .05 RPM | 61 .16 RPM |
SRP040447_skeletal_muscle | 0 .18 RPM | 35 .91 RPM |