RetrogeneDB ID:

retro_mmul_139

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:13:46629463..46630144(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMMUG00000005392
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:MMU.574
Ensembl ID:ENSMMUG00000021477
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mmul_139
ATGGCCCTGAGTGATGTCGATGTGAAAAAGCAGATTAAGCACATGATGGCTTTCATTGAGCAGGAAGCCAATGAGAAAGC
AGAGGAAATCGATGCCAAGGCTGAGGAAGAGTTTAACATTGAGAAAGGACGCCTTGTGCAAACCCAACGACTGAAGATTA
TGGAGTATTATGAGAAAAAGGAGAAGCAGATAGAGCAGCAGAAGAAAATCCAGATGTCCACCATGAGGAATCAGGCAAGG
CTGAAAGTCCTGAGAGCCCGAGATGACCTCATCTCGGATTTGCTCAGTGAGGCGAAGCTGAGACTCAGCCGGATTGTGGA
GAACCCAGAGGTCTACCAGGGGCTTCTGGATAAACTGGTGCTCCAGGGTCTGCTCCGACTGCTGGAACCTGTGATGATTG
TGCGCTGCCGGCCACAGGACCTCCTCCTGGTGGAGGCTGCTGTGCAAAAAGCCATCCCCGAATACATGACAATTTCCCAA
AAACATGTGGAGGTCCAGATTGATCAAGAGGCATACCTGGCTGTGAATGCAGCTGGAGGTGTGGAGGTCTACAGTGGCAA
TCAGAGAATAAAGGTTTCAAATACCTTGGAAAGCCGACTGGATCTCTCAGCGAAGGAAAAGATGCCAGAAATACGAATGG
CCTTGTTTGGTGCTAACGCCAACAGAAAGTTCTTTATATAA

ORF - retro_mmul_139 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.89 %
Parental protein coverage: 99.12 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMALSDADVQKQVRGLVGWQDSVSKKKKEISVHKQAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKK
MALSD.DV.KQ..............K.E......AEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKK
RetrocopyMALSDVDVKKQIKHMMAFIEQEANEKAE-EIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKK
ParentalIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQ
IQMS...NQARLKVLRARDDLI.DLL.EAK.RLS..V.....YQ.LLD.LVLQGL..LLEP.MIVRCR.Q
RetrocopyIQMSTMRNQARLKVLRARDDLISDLLSEAKLRLSRIVENPEVYQGLLDKLVLQGLLRLLEPVMIVRCRPQ
ParentalDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMP
D..LV.AAVQKAIP.Y.......V.VQIDQE.YL....AGGVE.Y.G...IKVSNTLESRLDL.A...MP
RetrocopyDLLLVEAAVQKAIPEYMTISQKHVEVQIDQEAYLAVNAAGGVEVYSGNQRIKVSNTLESRLDLSAKEKMP
ParentalEVRGALFGANANRKF
E.R.ALFGANANRKF
RetrocopyEIRMALFGANANRKF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 77 .99 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 101 .94 RPM
SRP007412_cerebellum 0 .00 RPM 60 .31 RPM
SRP007412_heart 0 .00 RPM 24 .50 RPM
SRP007412_kidney 0 .00 RPM 65 .96 RPM
SRP007412_liver 0 .00 RPM 14 .01 RPM
SRP007412_testis 20 .81 RPM 11 .16 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_139 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_139 was not experimentally validated.


Parental genes homology:
Parental genes homology involve 27 parental genes, and 73 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000174892 retrocopies
Bos taurus ENSBTAG000000142381 retrocopy
Canis familiaris ENSCAFG000000161517 retrocopies
Callithrix jacchus ENSCJAG000000172771 retrocopy
Cavia porcellus ENSCPOG000000245593 retrocopies
Equus caballus ENSECAG000000164872 retrocopies
Echinops telfairi ENSETEG000000192832 retrocopies
Felis catus ENSFCAG000000080814 retrocopies
Homo sapiens ENSG000001311003 retrocopies
Gorilla gorilla ENSGGOG000000150272 retrocopies
Loxodonta africana ENSLAFG000000038024 retrocopies
Microcebus murinus ENSMICG000000106436 retrocopies
Myotis lucifugus ENSMLUG000000148762 retrocopies
Macaca mulatta ENSMMUG00000021477 4 retrocopies
Monodelphis domestica ENSMODG000000184524 retrocopies
Mustela putorius furoENSMPUG000000181092 retrocopies
Mus musculus ENSMUSG000000192101 retrocopy
Nomascus leucogenys ENSNLEG000000078391 retrocopy
Otolemur garnettii ENSOGAG000000138865 retrocopies
Procavia capensis ENSPCAG000000160941 retrocopy
Pongo abelii ENSPPYG000000115601 retrocopy
Rattus norvegicus ENSRNOG000000119051 retrocopy
Sarcophilus harrisii ENSSHAG000000083002 retrocopies
Sus scrofa ENSSSCG000000007673 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000220313 retrocopies
Tarsius syrichta ENSTSYG000000106795 retrocopies
Tursiops truncatus ENSTTRG000000159311 retrocopy



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