RetrogeneDB ID: | retro_hsap_145 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:43368902..43369580(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000225099 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1E1 | ||
Ensembl ID: | ENSG00000131100 | ||
Aliases: | ATP6V1E1, ATP6E, ATP6E2, ATP6V1E, P31, Vma4 | ||
Description: | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857] |
Percent Identity: | 90.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI |
MA.SDAD..KQIKHMMAFIE.EANEKAEEIDAKAEEEFNIEKG.LV.TQRLKIMEY.EKKEKQIE.QKKI | |
Retrocopy | MAVSDADMRKQIKHMMAFIE*EANEKAEEIDAKAEEEFNIEKGQLVETQRLKIMEYHEKKEKQIE*QKKI |
Parental | QMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQD |
Q.SNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLE.RMIVRCRKQD | |
Retrocopy | QISNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEHRMIVRCRKQD |
Parental | FPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPE |
.PLVKAAVQKAIPMYKIATKN.VDVQIDQESYLPEDIAGGVEIYNG..KIKVS.T.ES.LDLIAQQMM.E | |
Retrocopy | LPLVKAAVQKAIPMYKIATKNNVDVQIDQESYLPEDIAGGVEIYNGNHKIKVSKTPESQLDLIAQQMMLE |
Parental | VRGALFGANANRKFLD |
V.GA.FGA.ANRKFLD | |
Retrocopy | VQGAFFGAKANRKFLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .08 RPM | 85 .75 RPM |
bodymap2_adrenal | 0 .02 RPM | 95 .63 RPM |
bodymap2_brain | 0 .00 RPM | 275 .30 RPM |
bodymap2_breast | 0 .00 RPM | 76 .62 RPM |
bodymap2_colon | 0 .00 RPM | 110 .33 RPM |
bodymap2_heart | 0 .00 RPM | 130 .46 RPM |
bodymap2_kidney | 0 .00 RPM | 191 .87 RPM |
bodymap2_liver | 0 .00 RPM | 52 .15 RPM |
bodymap2_lung | 0 .00 RPM | 95 .48 RPM |
bodymap2_lymph_node | 0 .00 RPM | 78 .59 RPM |
bodymap2_ovary | 0 .02 RPM | 77 .09 RPM |
bodymap2_prostate | 0 .00 RPM | 139 .39 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 94 .19 RPM |
bodymap2_testis | 0 .00 RPM | 95 .98 RPM |
bodymap2_thyroid | 0 .00 RPM | 107 .70 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 127 .18 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_235 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .04 RPM |