RetrogeneDB ID:

retro_ogar_839

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873529.1:12670384..12670917(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP6V1E1
Ensembl ID:ENSOGAG00000013886
Aliases:None
Description:ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857]


Retrocopy-Parental alignment summary:






>retro_ogar_839
CAAACCCAGAGACTGAAGGTTACGGAACACTGTGAGAAGAATGAGAAGCAGATTGAGCAGCAGAAGAAAATTCATCTGTC
CAATTTGATCAATTAAACAAGGCTCAAAGTGCTAAGAGCAAGAGATGACCTTCTCATAGACCTACTAAATGAAGCAAAAC
AGAGATTCAGCAAGATGGTAAAAGATACAACCAGATCCAAGTGCTGCTGGATGGACTGGTCCTCCAAGGTTTGTGCCAGT
TGCTGGAGCCCGTAATGATTGTTCATTGCAGGAAACAAGATTTACCTCTGGTAAAGGCTGCAGTGCAAAAGGCAATCCCT
ATGTACAAAATTGCCACTAAAAACAATGTTGATGCCCAAATGGATCAGGAGTCCTACCTGCCTGAGGAAATAGCTGGTGG
TGTTGAGATCTATAATGGGGATTGTAAAATAAAGGTTTCCAATACCCTAGAAAGCCAGCTGGTCCTCACAGCCCAGCAGA
TGATGCCAGAAGTACAGGGAGCCTTGTTTGGTGCAAATGCCAACAGAAGTTTT

ORF - retro_ogar_839 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.89 %
Parental protein coverage: 78.85 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTR-YQVL
QTQRLK..E..EK.EKQIEQQKKI..SNL.N..RLKVLRARDDL..DLLNEAKQR.SK.VKDTTR..QVL
RetrocopyQTQRLKVTEHCEKNEKQIEQQKKIHLSNLIN*TRLKVLRARDDLLIDLLNEAKQRFSKMVKDTTR<IQVL
ParentalLDGLVLQGLYQLLEPRMIVRCRKQDLPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEEIAGGVEIYN
LDGLVLQGL.QLLEP.MIV.CRKQDLPLVKAAVQKAIPMYKIATKN.VD.Q.DQESYLPEEIAGGVEIYN
RetrocopyLDGLVLQGLCQLLEPVMIVHCRKQDLPLVKAAVQKAIPMYKIATKNNVDAQMDQESYLPEEIAGGVEIYN
ParentalGDRKIKVSNTLESRLDLIAQQQMMPEVRGALFGANANRKF
GD.KIKVSNTLES.L.L.A.QQMMPEV.GALFGANANR.F
RetrocopyGDCKIKVSNTLESQLVLTA-QQMMPEVQGALFGANANRSF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_839 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 27 parental genes, and 73 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000174892 retrocopies
Bos taurus ENSBTAG000000142381 retrocopy
Canis familiaris ENSCAFG000000161517 retrocopies
Callithrix jacchus ENSCJAG000000172771 retrocopy
Cavia porcellus ENSCPOG000000245593 retrocopies
Equus caballus ENSECAG000000164872 retrocopies
Echinops telfairi ENSETEG000000192832 retrocopies
Felis catus ENSFCAG000000080814 retrocopies
Homo sapiens ENSG000001311003 retrocopies
Gorilla gorilla ENSGGOG000000150272 retrocopies
Loxodonta africana ENSLAFG000000038024 retrocopies
Microcebus murinus ENSMICG000000106436 retrocopies
Myotis lucifugus ENSMLUG000000148762 retrocopies
Macaca mulatta ENSMMUG000000214774 retrocopies
Monodelphis domestica ENSMODG000000184524 retrocopies
Mustela putorius furoENSMPUG000000181092 retrocopies
Mus musculus ENSMUSG000000192101 retrocopy
Nomascus leucogenys ENSNLEG000000078391 retrocopy
Otolemur garnettii ENSOGAG00000013886 5 retrocopies
Procavia capensis ENSPCAG000000160941 retrocopy
Pongo abelii ENSPPYG000000115601 retrocopy
Rattus norvegicus ENSRNOG000000119051 retrocopy
Sarcophilus harrisii ENSSHAG000000083002 retrocopies
Sus scrofa ENSSSCG000000007673 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000220313 retrocopies
Tarsius syrichta ENSTSYG000000106795 retrocopies
Tursiops truncatus ENSTTRG000000159311 retrocopy



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