RetrogeneDB ID: | retro_itri_64 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393318.1:5750594..5751275(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000026448 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1E1 | ||
Ensembl ID: | ENSSTOG00000022031 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857] |
Percent Identity: | 74.65 % |
Parental protein coverage: | 99.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARL |
IKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQ.S...NQARL | |
Retrocopy | IKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQLSTMRNQARL |
Parental | KVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKA |
KVLRARD.LI..LL..AK..L...V.D...YQ.LLD.LVLQ.L..LLEP..IVRCR.QDF.LV..AVQKA | |
Retrocopy | KVLRARDNLISELLRDAKLKLGRIVADPKVYQDLLDKLVLQALLRLLEPVVIVRCRPQDFLLVETAVQKA |
Parental | IPMYKIATKKDVDVQIDQEAYLPEEIAGGVEIYNGNRKIKVSNTLESRLDLIAQQMMPEVRGALFGANAN |
IP.Y...T...VD...DQE.YL....AGGVEIY..NRK..VSNTLESRLDL.AQQ.MPE.R..LFGAN.N | |
Retrocopy | IPEYQNVTQRNVDIHMDQEDYLGVNAAGGVEIYSSNRKTMVSNTLESRLDLSAQQKMPEIRMTLFGANPN |
Parental | RKF |
RKF | |
Retrocopy | RKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |