RetrogeneDB ID: | retro_fcat_602 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:24540741..24541353(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000030016 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1E1 | ||
Ensembl ID: | ENSFCAG00000008081 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857] |
Percent Identity: | 81.25 % |
Parental protein coverage: | 91.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKI |
.ALSDADVQKQIKH.MAFIEQEA.EKAEEIDAK..EE.NIEKGRL.QTQRLK.M.Y.EKKEKQ.EQQ.KI | |
Retrocopy | VALSDADVQKQIKHVMAFIEQEADEKAEEIDAK--EELNIEKGRLAQTQRLKRMDYCEKKEKQTEQQMKI |
Parental | QMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ-GLYQLLEPRMIVRCRKQ |
QMSNLMNQARLKVLR.R.DLITDLLN.AKQRL.KVVKDTTR..V.LDG.VLQ.GLYQL...RMIVRC.KQ | |
Retrocopy | QMSNLMNQARLKVLRVRGDLITDLLNGAKQRLGKVVKDTTRHRVILDGPVLQ<GLYQLSALRMIVRCKKQ |
Parental | DFPLVKAAVQKAIPMYKIATKK-DVDVQIDQEAYLPEEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQ |
DFP.VKAAVQKAIPMY.IA..K.D.DV..DQEA.LPEEIAGGVEIY.GDRKIKVS..LES.LDLIAQ. | |
Retrocopy | DFPPVKAAVQKAIPMYRIAARK>DIDVHVDQEAALPEEIAGGVEIYKGDRKIKVSSPLESQLDLIAQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 215 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 126 .97 RPM |
SRP017611_liver | 0 .00 RPM | 25 .88 RPM |