RetrogeneDB ID: | retro_ggor_1125 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 14:87612017..87612297(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G1 | ||
Ensembl ID: | ENSGGOG00000001626 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.88 % |
Parental protein coverage: | 69.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MQTAG-PLFISPALIRCCTRGLIR-PASASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVSRDIDTAAK |
MQT.G..L..SPAL.RCCTRGLIR...S.SFLNSP.NSS.QPSYS..P.QVAR.EFQT..VSRD.DTAA. | |
Retrocopy | MQTPG<ALLTSPALVRCCTRGLIR<AVSVSFLNSPENSSEQPSYSRSPHQVARWEFQTRAVSRDVDTAAT |
Parental | FIGAGAATVGVAGSGAGIGTVFGSLI |
.IG.GAA.VGVAG.G.GIGTV.GSL. | |
Retrocopy | LIGVGAAPVGVAGFGPGIGTVSGSLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 41 .77 RPM |
SRP007412_cerebellum | 0 .04 RPM | 20 .68 RPM |
SRP007412_heart | 0 .00 RPM | 115 .54 RPM |
SRP007412_kidney | 0 .00 RPM | 61 .09 RPM |
SRP007412_liver | 0 .00 RPM | 38 .51 RPM |
SRP007412_testis | 0 .00 RPM | 32 .22 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1464 |